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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttctttaacaaaggtttccatgcgtatttctgcatctgcgggttttctgattcgcctgtggttctcttttattcgatgtag

Basic information

species Zea mays
transcript GRMZM2G126594_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32863531|gb|CF003213.1|CF003213
EST:     GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT                         CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|211490990|gb|FL061102.1|FL061102
EST:     GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT                         CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|67034878|gb|CO463411.1|CO463411
EST:     GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT                         CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|14701464|gb|BI233882.1|BI233882
EST:     GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT                         CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|13149648|gb|BG319970.1|BG319970
EST:     GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT                         CCGCCAAAGCCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCG-CTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|76011925|gb|DT939095.1|DT939095
EST:     GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|67025568|gb|CO454317.1|CO454317
EST:     GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT                         CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|29947113|gb|CB816488.1|CB816488
EST:     G-GAAATATTCGACGGAGCCGTCCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|78026411|gb|DV494798.1|DV494798
EST:     CCAACCCCACCAAGT                         CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: CCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|76011924|gb|DT939094.1|DT939094
EST:     GCCATGGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GCCATGGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|33770648|gb|CF272942.1|CF272942
EST:     GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|78089300|gb|DV517674.1|DV517674
EST:     GAAATATTCGACGGAGCCGTCCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|211496762|gb|FL061129.1|FL061129
EST:     GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|50333911|gb|CO529037.1|CO529037
EST:     GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|211490997|gb|FL061109.1|FL061109
EST:     GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT                         CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|78089302|gb|DV517676.1|DV517676
EST:     GAAATATTCGACGGAGCCGTCCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|211490989|gb|FL061101.1|FL061101
EST:     GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT                         CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|211493873|gb|FL061115.1|FL061115
EST:     GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|33102839|gb|CF062799.1|CF062799
EST:     GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|211496759|gb|FL061126.1|FL061126
EST:     GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT                         CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|108824025|gb|EC278033.1|EC278033
EST:     GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|32910969|gb|CF015781.1|CF015781
EST:     GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT                         CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|60394642|gb|DN227512.1|DN227512
EST:     CAACCCCACCAAGT                         CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: CAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|31664276|gb|CD573001.1|CD573001
EST:     GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|76912495|gb|DV164760.1|DV164760
EST:     TCAGCCATGGTGAAATATTTGACGGAGCCGTCCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: TCAGCCATGGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|30088089|gb|CB886294.1|CB886294
EST:     GTGAAATATTCGACGGAGCCG-CCAACCCCACCAAGT                         CCGCTAAGG-CATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|211496760|gb|FL061127.1|FL061127
EST:     GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT                         CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|4730495|gb|AI649661.1|AI649661
EST:     GNGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|213172413|gb|FM189295.1|FM189295
EST:     GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT                         CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|24765793|gb|CA400952.1|CA400952
EST:     CAGCCATGGTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT                         CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: CAGCCATGGTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|31358169|gb|CD442526.1|CD442526
EST:     GTGAAATATTCGACGGAGCCGACCAACCCCACCAAGT                         CCGCCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|71434744|gb|DR815794.1|DR815794
EST:     GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|50329073|gb|CO524199.1|CO524199
EST:     GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|211199565|gb|FL177986.1|FL177986
EST:     GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|76912497|gb|DV164761.1|DV164761
EST:     GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGT                         CCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCGTCCAACCCCACCAAGTgtaagcttct ... ttcgatgtagCCGCTAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG