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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCGGCGTCATGTTCGCCGCCCGCGACACCACCGCCAGCGTGCTCACCTGGATGGTCAAGTTCCTCGGCGACCACCCGGCGGTCCTCAAGGCGGTCATCgtgagttgtccctcccggtcccgggtcttgtttattgggtggcatcaaactgcgggcgcccgccgcgcggagacagactgactgacgggatgagctggtgtgtgtgtgtgttgcgaacag

Basic information

species Zea mays
transcript GRMZM2G126505_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126505_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g47470.1 (Oryza sativa), 5'ss of exon 2
GATCGGCGTCATGTTCGCCGCCCGCGACACCACCGCCAGCGTGCTCACCTGGATGGTCAAGTTCCTCGGCGACCACCCGGCGGTCCTCAAGGCGGTCATCgtgagttgtccctcccggtcccgggtcttgtttattgggtggcatcaaactgcgggcgcccgccgcgcggagacagactgactgacgggatgagctggtgtgtgtgtgtgttgcgaacag
 ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||| ||| ||||  ||  | |    |      | || |||       | | |   || ||  | |||| |    |  |  ||  ||                                       
CATCGGCGTCATCTTCGCCGCCCGCGACACCACCGCCAGCGTCCTCACCTGGATGGTCAAGTTCCTCGGCGACCACCCCGCCGTCCTCAAGGCCGTCACCgtaagttcgcctcctcatatctca---tagtatatcaaagtccttgatggtgaggctgaccgcgggt--gccatggatggaacag-----------------------------------

upper sequence: GRMZM2G126505_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA09G35250.1 (Glycine max), 5'ss of exon 3
GATCGGCGTCATGTTCGCCGCCCGCGACACCACCGCCAGCGTGCTCACCTGGATGGTCAAGTTCCTCGGCGACCACCCGGCGGTCCTCAAGGCGGTCATCgtgagttgtccctcccggtcccgggtcttgtttattgggtggcatcaaa-ctgcgggcgcccgccgcgcggagacagactgactgacgggatgagctggtgtgtgtgtgtgttgcgaacag
 || |||||||| ||||| || || |||||||||||||| ||||| || ||||| ||||||| |||||| ||  ||||    |||||  | || || |  || ||| ||| ||         |  | || ||| |        ||  |  ||| ||||         |   | |     | |   |   |||     |     |                 
TATTGGCGTCATTTTCGCAGCTCGTGACACCACCGCCAGTGTGCTGACGTGGATCGTCAAGTACCTCGGTGAAAACCCCAGTGTCCTAGAAGCTGTTAATgtaagt-gtctctt--------gttttttctttctcaaagaaaattgaggctgagggcataaaaatagtaaaaagtagttca--aaaatgattcttcgacacctcaaaaga----------

upper sequence: GRMZM2G126505_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA01G35660.2 (Glycine max), 5'ss of exon 2
GATCGGCGTCATGTTCGCCGCCCGCGACACCACCGCCAGCGTGCTCACCTGGATGGTCAAGTTCCTCGGCGACCACCCGGCGGTCCTCAAGGCGGTCATCgtgagtt--------gtccctcc-cggtcccgggtcttgtttattgggtggcatcaaactgcgggcgcccgccgcgcggagacagactgactgacgggatgagctggtgtgtgtgtgtgttgcgaacag
 || |||||||| ||||| || || |||||||||||||| ||||| || ||||| ||||||| ||| || ||  ||||    |||||  | || || |  || |||         ||||  || |   | |    ||||||| ||   | |  ||||  |  | | |||         |  | | | |   | |    || |                           
AATTGGCGTCATATTCGCAGCTCGTGACACCACCGCCAGTGTGCTGACGTGGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACTgtaagtgtcttctgggtcctaccaccaccaccacccttgtttttttctttg--tcaatttttgag-gccataaagatagtaaaaaagtagttca-aaaataatt-------------------------