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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGGCAACTGTACACACTGTGGATCCTAGTGAAGCTTCATGAGGCTGTGCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacattctctcaactatttttgccagttcatgacaattactactgattcctggatccatgaatgccactgacatgtcttcagtatatgaatgggta...

Basic information

species Zea mays
transcript GRMZM2G125832_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G125832_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g30040.1 (Oryza sativa), 5'ss of exon 2
TTCTGGCAACTGTACACACTGTGGATCCTAGTGAAGCTTCATGAGGCTGTGCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacattctctcaactatttttgccagtt--catgacaattactactgattcctggatcca---tgaatgccactgacatgtcttcagtatatgaatgggta
|||||||||||||||||||| ||||| || || ||||| ||||| ||||| ||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||  |||| | |  |||  | | ||  |||| | ||||| | |   |      ||||   || ||  | ||||||||  ||| |   || | | |   
TTCTGGCAACTGTACACACTCTGGATTCTTGTCAAGCTCCATGAAGCTGTACCAGGAAGGAGGTACAACAGATATGTGGAGCTTGCACAAGCTGCATTTGgtgagacatgttctctagt-ctttaactattttgcatgtccattacaattagctttctattccaagctggatatctctgacatgatttctgctaat-agtag---

upper sequence: GRMZM2G125832_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA13G31880.1 (Glycine max), 5'ss of exon 3
TTCTGGCAACTGTACACACTGTGGATCCTAGTGAAGCTTCATGAGGCTGTGCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagaca----ttctctcaactatttttgccagttcat-gacaattactactgattcctggatccatgaatgccactgacatgtcttcagtatatgaatgggta
|  |||||||| |||||  | |||||  | ||  ||||||| || || || ||||| |  || |||||||||||||| ||||| ||||| |||||||||||| ||       |||  || | || |||| | ||    | ||    ||  |  ||||     |   |  |    || | | |||     |   |||| |    ||
TGTTGGCAACTTTACACGTTATGGATTTTGGTTCAGCTTCACGAAGCAGTTCCAGGTAAAAGATACAACAGATATGTGGAGCTAGCACAAGCAGCATTTGgtaagcttgtttttccatcgattactttttctagcaagttgatgtataacagagatt----aaaaaaaaacctacattaaaatgatgaaatgttatgta-acata

upper sequence: GRMZM2G125832_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA15G07440.1 (Glycine max), 5'ss of exon 2
TTCTGGCAACTGTACACACTGTGGATCCTAGTGAAGCTTCATGAGGCTGTGCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgaga----cattctctcaactattttt----gccagttcatgaca-attactactgattcctggatccatgaatgccactgacatgtctt-cagtatatgaatgggta
|  |||||||| |||||  | ||||| || ||  ||||||| || || || ||||| |  || |||||||||||||| ||||| ||||| |||||||||||| ||     | ||| ||| | || ||||    || |||| |||  | ||   ||   |       ||  || ||     |||| |||| ||  || |||          
TGTTGGCAACTTTACACGTTATGGATTCTGGTTCAGCTTCACGAAGCAGTTCCAGGTAAAAGATACAACAGATATGTGGAGCTAGCACAAGCAGCATTTGgtaagcttgtctttccctcgattactttttctagcaagttgatgtaacatagttaaaaaaaggctaattaattaacaatgctgaaatgttttgtagcata----------

upper sequence: GRMZM2G125832_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv18s0001g11300.t01 (Vitis vinifera), 5'ss of exon 2
TTCTGGCAACTGTACACACTGTGGATCCTAGTGAAGCTTCATGAGGCTGTGCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagac-attctctcaactatttttgccagttcatgacaattactactgattcctggatccatgaatgccactgacatgtcttca-gtatatgaatgggta---
|| |||||||| || ||| ||||||| |||||  | || ||||| || || ||||| | ||||||||| |||||||| || |||||||| |||||||||||||||||     |||  ||      |  || || | || | |   | ||| |   || ||| ||  ||  ||||  ||||     |  |    |  |  |||   
TTTTGGCAACTTTATACATTGTGGATTCTAGTTCAACTACATGAAGCAGTTCCAGGGAAGAGGTACAATAGATATGTGGAACTTGCACAAGCAGCATTTGgtgagactgcattctagaccccaactttcaattga-gaaattccatgctg-tatatgcatc-atagat--cacttgcatgggaaaatatgctgggttttgtacgg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71766252|gb|DR964189.1|DR964189
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|71426295|gb|DR807345.1|DR807345
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|89764303|gb|DY691160.1|DY691160
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|148995053|gb|EE034367.2|EE034367
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|74233731|gb|DT641645.1|DT641645
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|50325971|gb|CO521097.1|CO521097
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|78085037|gb|DV513430.1|DV513430
EST:     GGCAGGGAGGAGGTACAACGGATATGTTGAGCTTGCACAGGCAGGATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAGCTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|78113400|gb|DV531792.1|DV531792
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCCACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|148980665|gb|EE027283.2|EE027283
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|149071634|gb|EE160029.2|EE160029
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|91055399|gb|EB165817.1|EB165817
EST:     GCCAGGCAGGAGGGACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGG
EST: gi|93012512|gb|EB638032.1|EB638032
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GA-AAAAA-TGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|71439655|gb|DR820705.1|DR820705
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|101401412|gb|EB822383.1|EB822383
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|148941768|gb|EC886729.2|EC886729
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|71772490|gb|DR970422.1|DR970422
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|74243040|gb|DT650954.1|DT650954
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|76914137|gb|DV165420.1|DV165420
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|76010987|gb|DT938157.1|DT938157
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|74233140|gb|DT641054.1|DT641054
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|78085547|gb|DV513940.1|DV513940
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|211265514|gb|FL351842.1|FL351842
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|211101474|gb|FL457328.1|FL457328
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAA--TGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|149106721|gb|EE188617.2|EE188617
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|91875166|gb|EB405123.1|EB405123
EST:     GCCAGGCAGGAGGTACCACAGATATGTTGAGCTTGCCCAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTTTCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|71426898|gb|DR807948.1|DR807948
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|71444351|gb|DR825401.1|DR825401
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|74240540|gb|DT648454.1|DT648454
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGG
EST: gi|50331730|gb|CO526856.1|CO526856
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|93281689|gb|EB673953.1|EB673953
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|88756124|gb|DY540265.1|DY540265
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGGTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|149001882|gb|EE038834.2|EE038834
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|71325403|gb|DR799382.1|DR799382
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
EST: gi|89756369|gb|DY686419.1|DY686419
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCT
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCT
EST: gi|91054811|gb|EB165229.1|EB165229
EST:     GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTG                         GAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG
genomic: GCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 136

TTCTGGCAACTGTACACACTGTGGATCCTAGTGAAGCTTCATGAGGCTGTGCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGCAGGCACTGCAACTGCACTGATCCTTGTTGGAGGGGAGACCATGAAGCT


Block sizes: 25 (upstream exon), 31 (downstream exon)
Score: 2

TTCTGGCAACTGTACACACTGTGGATCCTAGTGAAGCTTCATGAGGCTGTGCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGCAGGCACTGCAACTGCACTGATCCTTGTTGGAGGGGAGACCATGAAGCT


Block sizes: 35 (upstream exon), 18 (downstream exon)
Score: 4

TTCTGGCAACTGTACACACTGTGGATCCTAGTGAAGCTTCATGAGGCTGTGCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGCAGGCACTGCAACTGCACTGATCCTTGTTGGAGGGGAGACCATGAAGCT


Block sizes: 49 (upstream exon), 40 (downstream exon)
Score: 51

TTCTGGCAACTGTACACACTGTGGATCCTAGTGAAGCTTCATGAGGCTGTGCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacatt ... gttcatccagGAGAAAAAATGGGAATGTGGCTGGCTCTTTTCCCAACTATTTATCTCTCGGCAGGCACTGCAACTGCACTGATCCTTGTTGGAGGGGAGACCATGAAGCT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCTGGCAACTGTACACACTGTGGATCCTAGTGAAGCTTCATGAGGCTGTGCCAGGCAGGAGGTACAACAGATATGTTGAGCTTGCACAGGCAGCATTTGgtgagacattctctcaactatttttgccagttcatgacaattactactgattcctggatccatgaatgccactgacatgtcttcagtatatgaatgggta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT