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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGCGACTTCCTCAGGACCAAAGGAGGCGCCAGCGAATAACCCTGGGCTCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgagctttactcctgtctatttcaccgagggagtgtgtttatcaagcacatgtgcgtgctattcagctcgggtttccagttttggtgctcgatg...

Basic information

species Zea mays
transcript GRMZM2G125310_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13178259|gb|BG349517.1|BG349517
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|78113103|gb|DV531497.1|DV531497
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|149071547|gb|EE159940.2|EE159940
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|13198653|gb|BG354455.1|BG354455
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|211376698|gb|FL282321.1|FL282321
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|18168536|gb|BM338376.1|BM338376
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|37378102|gb|CF625710.1|CF625710
EST:     GCCACCNAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: GCCACC-AAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|29544286|gb|CB604666.1|CB604666
EST:     GCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTNCACGTGT
genomic: GCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACT-CACGTGT
EST: gi|211376699|gb|FL282322.1|FL282322
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|211376692|gb|FL282315.1|FL282315
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|113701200|gb|EE678704.1|EE678704
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|213174962|gb|FM184828.1|FM184828
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|211338211|gb|FL470835.1|FL470835
EST:     CTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: CTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|211376696|gb|FL282319.1|FL282319
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|211280531|gb|FL042849.1|FL042849
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|67022929|gb|CO451678.1|CO451678
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|113703344|gb|EE680848.1|EE680848
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|30087092|gb|CB885300.1|CB885300
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|18173071|gb|BM348459.1|BM348459
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACCTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|29167847|gb|CB411107.1|CB411107
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAGAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|67031599|gb|CO460348.1|CO460348
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|40334690|gb|CK368760.1|CK368760
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|211376693|gb|FL282316.1|FL282316
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|30087617|gb|CB885823.1|CB885823
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGATGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|211376697|gb|FL282320.1|FL282320
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|149069536|gb|EE157909.2|EE157909
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|71314913|gb|DR794077.1|DR794077
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|113702988|gb|EE680492.1|EE680492
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|78080156|gb|DV508568.1|DV508568
EST:     GCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: GCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
EST: gi|30032081|gb|CB833932.1|CB833932
EST:     TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACG                         ATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG
genomic: TCCAGACCGAGGTCGACCCCGCCACCAAAGGCTACTTCTTGCAACAAACGgtaacgcgag ... tttgtttcagATGTTACGTGTGAAGGACCCAAAAGTGAGCCTTGACTTCTACTCACGTGTG