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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGCCTCTGTCCAGATCAACATTGGCCACTTGGATGCGAATGGCCTGTATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttcatgatatgtttattgcatttgtctagcccataaaatttaaagcttgagtgtaaagcctacatgaggctttttactgtctatgtgtttcct...

Basic information

species Zea mays
transcript GRMZM2G125300_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G125300_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g46490.1 (Oryza sativa), 5'ss of exon 3
CCATGCCTCTGTCCAGATCAACATTGGCCACTTGGATGCGAATGGCCTGTATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttcatgatatgtttattgcatttgtctagcccataaaatttaaagcttgagtgtaaagcctacatgaggctttttactgtctatgtgtttcct--
||||||||| ||||||||||||||||| ||  |||||| |||||| ||||| ||||| | |||||| ||||||||||||||||||||  ||||||||||||| |   |   ||  |  |||  |  ||||   |   ||  ||  | |     |  | |||          |   ||| |  | |  ||   || |      
CCATGCCTCGGTCCAGATCAACATTGGGCATGTGGATGAGAATGGGCTGTACGATGGCCGCTTCACCACGTTTGCTCTCTCTGGGTTCATCCGTGCTCAGgtaattatcattgtaaacttttgtttatttacatgtgcctgaatttctctttgtgaactgtctcattgctgtattgctct--atttcctgcatgatcatgaa

upper sequence: GRMZM2G125300_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA07G37700.1 (Glycine max), 5'ss of exon 2
CCATGCCTCTGTCCAGATCAACATTGGCCACTTGGATGCGAATGGCCTGTATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttcatgatatgtttattgcatttgtctagcccataaaatttaaagct--tgagtgtaaagcctacatgaggctttttactgtc-tatgtgtttcct---
||||||||| || ||||| ||||||||||| ||||||| ||||||  | ||| ||||||| ||  | || | |||||||||||| || || || || |||      ||| |  || | |  | | ||||  |     |  ||   ||||    |  | || |||  | | || |   ||||   |       |    || |||   
CCATGCCTCGGTTCAGATAAACATTGGCCATTTGGATGAGAATGGTATCTATAATGGTCATTTTTCCACTTCTGCTCTCTCTGGCTTCGTTCGAGCACAG-

upper sequence: GRMZM2G125300_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT5G27700.1 (Arabidopsis thaliana), 5'ss of exon 3
CCATGCCTCTGTCCAGATCAACATTGGCCACTTGGATGCGAATGGCCTGTATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgt----gacagttcatgatatgtttattgcatttgtctagcccataaaatttaa---agcttgagtgta----aagcctacatgagg-------ctttttactgtctatgtgtttcct----------------------------------
 ||||||||||| ||| |||||||||| || || ||||| |||||| ||||    || || |||||||| ||||||||||  || |||||||||||||||||     ||| ||  | | ||| ||  | |||   |    |  |  | | || |      ||| |||||    |||   |  |||         | ||| | | ||||  | | | |                                   
TCATGCCTCTGTTCAGCTCAACATTGGTCATTTAGATGCTAATGGCTTGTACACCGGACAGTTCACAACCTTTGCTCTCTGCGGTTTTGTCCGTGCTCAGgtttgtaacaatttctca-atgctttgtccataattgagtcagaagagagttgatttgttttgtgtgtatcataagaagagttgaacaaccaaccctttgaatttctacttatcttcataggttaattaactattgatgtacacgattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32836843|gb|CD976521.1|CD976521
EST:     ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAG                         GGCGACGCAGACAGCTCCTTGGACAGGCTGTGGCAGAAGAAGAAGGCTGAT
genomic: ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
EST: gi|9730947|gb|BE509699.1|BE509699
EST:     ATGATGGTCACTTCACAACATTTGCTCTTTCTGGGTTTGTCCGTGCTCAG                         GGCGATGCAGACAGCTCCTTGGACAGGCTGTGGCAGAAGAAGAAGGCTGAT
genomic: ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
EST: gi|15426862|gb|BI542684.1|BI542684
EST:     ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTTCGTGCTCAG                         GGCGACGCAGACAGCCCCTTGGACAGGCTGTGGCAGAAGAAGAAGGCTGAT
genomic: ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
EST: gi|32836427|gb|CD976105.1|CD976105
EST:     ACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAG                         GGCGACGCAGACAGCTCCTTGGACAGGCTGTGGCAGAAGAAGAAGGCTGAT
genomic: ACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
EST: gi|32932877|gb|CF037689.1|CF037689
EST:     ATGATGGTCACTTCACAACATTTGCTCTCTCTGGGTTTGTCCGTGCTCAG                         GGCGATGCAGACAGCTCCTTGGACAGGCTGTGGCAGAAGAAGAAGGCTGAT
genomic: ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
EST: gi|91869600|gb|EB400457.1|EB400457
EST:     ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAG                         GGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
genomic: ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
EST: gi|60346165|gb|DN213138.1|DN213138
EST:     ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTTCGTGCTCAG                         GGCGACGCAGACAGCTCCTTGGACAGGCTGTGGCAGAAGAAGAAGGCTGAT
genomic: ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
EST: gi|32793079|gb|CD945315.1|CD945315
EST:     ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAG                         GGCGACGCAGACAGCTCCTTGGACAGGCTGTGGCAGAAGAAGAAGGCTGAT
genomic: ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
EST: gi|71431500|gb|DR812550.1|DR812550
EST:     ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAG                         GGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
genomic: ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
EST: gi|113590052|gb|DW756033.1|DW756033
EST:     TTTGTCCGTGCTCAG                         GGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
genomic: TTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
EST: gi|33094595|gb|CF054589.1|CF054589
EST:     ATGATGGTCACTTCACAACATTTGCTCTCTCTGGGTTTGTCCGTGCTCAG                         GGCGATGCAGACAGCTCCTTGGACAGGCTGTGGCAGAAGAAGAAGGCTGAT
genomic: ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
EST: gi|32843230|gb|CD982911.1|CD982911
EST:     ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAG                         GGCGACGCAGACAGCTCCTTGGACAGGCTGTGGCAGAAGAAGAAGGCTGAT
genomic: ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
EST: gi|9824794|gb|BE575101.1|BE575101
EST:     ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAG                         GGCGACGCAGACAGCTCCTTGGACAGGCTGTGGCAGAAGAAGAAGGCTGAT
genomic: ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
EST: gi|33091065|gb|CF051059.1|CF051059
EST:     ATGATGGTCACTTCACAACATTTGCTCTCTCTGGGTTTGTCCGTGCTCAG                         GGCGATGCAGACAGCTCCTTGGACAGGCTGTGGCAGAAGAAGAAGGCTGAT
genomic: ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
EST: gi|211133498|gb|FL122205.1|FL122205
EST:     ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAG                         GGTGACGCAGACAGCTCCTTGGACAGGCTGTGGCAAAAGAAGAAGGCTGAT
genomic: ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
EST: gi|6695761|gb|AW288839.1|AW288839
EST:     ATGATGGTCACTTCACAACATTTGCTCTCTCTGGGTTTGTCCGTGCTCAG                         GGCGACGCAGACAGCTCCTTGGACAGGCTGTGGCAGAAGAAGAAGGCTGAT
genomic: ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
EST: gi|9952632|gb|BE639320.1|BE639320
EST:     ATGATGGTCACTTCACAACATTTGCTCTCTCTGGGTTTGTCCGTGCTCAG                         GGCGATGCAGAC
genomic: ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGAC
EST: gi|32843719|gb|CD983400.1|CD983400
EST:     ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAG                         GGCGACGCAGACAGCTCCTTGGACAGGCTGTGGCAGAAGAAGAAGGCTGAT
genomic: ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
EST: gi|211181607|gb|FL122698.1|FL122698
EST:     ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAG                         GGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT
genomic: ATGATGGTCACTTCACAACGTTTGCTCTCTCTGGGTTTGTCCGTGCTCAGgtgacagttc ... ttgtgcacagGGCGACGCAGACAGCTCCTTGGACAGGTTGTGGCAGAAGAAGAAGGTTGAT