1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCAGGAAACAGGAGCACGAGCGGAGCAGAAGGCAGTCATGGCGGATGAGGTGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAGgtaaagagcgagaccaccctgcccttcccgccccgcgttcccttgacacctctccagcttccaacaccccctcttgtgccggcgcag
species | Zea mays |
transcript | GRMZM2G124557_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAG AAGAAGGACTCCTTTGAATCGCTGGTGATGGAGCACATCCGCCTCAACGGCEST: gi|74242768|gb|DT650682.1|DT650682
genomic: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAGgtaaagagcg ... gccggcgcagAAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCCGCCTCAACGGC
EST: ATCGTCACGGTGGAGAAG AAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCCGCCTCAACGGCEST: gi|71443999|gb|DR825049.1|DR825049
genomic: ATCGTCACGGTGGAGAAGgtaaagagcg ... gccggcgcagAAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCCGCCTCAACGGC
EST: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAG AAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCCGCCTEST: gi|50322440|gb|CO517566.1|CO517566
genomic: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAGgtaaagagcg ... gccggcgcagAAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCCGCCT
EST: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAG AAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCCGCCTCAACGGCEST: gi|78080907|gb|DV509319.1|DV509319
genomic: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAGgtaaagagcg ... gccggcgcagAAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCCGCCTCAACGGC
EST: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAG AAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCEST: gi|89762555|gb|DY690082.1|DY690082
genomic: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAGgtaaagagcg ... gccggcgcagAAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATC
EST: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAG AAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCCGCCTCAACGGCEST: gi|76284190|gb|DV023758.1|DV023758
genomic: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAGgtaaagagcg ... gccggcgcagAAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCCGCCTCAACGGC
EST: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAG AAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCCGCCTCAACGGCEST: gi|71448301|gb|DR829351.1|DR829351
genomic: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAGgtaaagagcg ... gccggcgcagAAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCCGCCTCAACGGC
EST: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAG AAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCCGCCTCAACGGCEST: gi|76910998|gb|DV164124.1|DV164124
genomic: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAGgtaaagagcg ... gccggcgcagAAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCCGCCTCAACGGC
EST: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAG AAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCCGCCTCAACGGCEST: gi|71767373|gb|DR965310.1|DR965310
genomic: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAGgtaaagagcg ... gccggcgcagAAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCCGCCTCAACGGC
EST: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTTACGGTGGAGAAG AAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCCGCCTCAAC
genomic: TGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAGgtaaagagcg ... gccggcgcagAAGAAGGACTCCTTTGAGTCGCTGGTGATGGAGCACATCCGCCTCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGGAAACAGGAGCACGAGCGGAGCAGAAGGCAGTCATGGCGGATGAGGTGGAGCTTGCTGCGGACCAGCACGTCCGCTACATCGTCACGGTGGAGAAGgtaaagagcgagaccaccctgcccttcccgccccgcgttcccttgacacctctccagcttccaacaccccctcttgtgccggcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA