Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatcttgttaagacaatatgttgtttcaactgtgtttcttttccttttttgtgtcgttttctggaaaattgtgtggatattggatgctttgcag

Basic information

species Zea mays
transcript GRMZM2G124455_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124455_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g25850.1 (Oryza sativa), 5'ss of exon 2
GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatcttgttaagacaatatgtt--gtttcaactgtgtttcttttccttttttgt--gtcgttttctgg-----aaaattgtgtggatattggatgctttgcag
| ||||| || ||||| ||||| ||||| |||||||||||||| ||||||| ||||  ||  | ||||  || |   ||||     |  | |  || |||||||     | | | ||         || |  ||   ||||||| || ||| |||
GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCgtaattatccagtccatacaacttgctccatttctttcttcctccacttactttttttctactggatctccaatcaccgaattaatgaaaatattgggtgttttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29544424|gb|CB604804.1|CB604804
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|149008748|gb|EE040945.2|EE040945
EST:     TTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: TTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|60351803|gb|DN218776.1|DN218776
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|40337235|gb|CK371305.1|CK371305
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|31664230|gb|CD572955.1|CD572955
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|148948500|gb|EC894019.2|EC894019
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|31997580|gb|CD661666.1|CD661666
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|50329149|gb|CO524275.1|CO524275
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|28576119|gb|CB282011.1|CB282011
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGNNNNNNNATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|76292534|gb|DV032102.1|DV032102
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|71439541|gb|DR820591.1|DR820591
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|148933163|gb|EC876803.2|EC876803
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|67010892|gb|CO439641.1|CO439641
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|148972354|gb|EE023268.2|EE023268
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|67013650|gb|CO442399.1|CO442399
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|71440079|gb|DR821129.1|DR821129
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|110194904|gb|EC876802.1|EC876802
EST:     CTCAAGCCTTTTAG-                         GAAGGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGA
genomic: CTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAA-GGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGA
EST: gi|101389793|gb|EB816827.1|EB816827
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|29544566|gb|CB604946.1|CB604946
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|149040135|gb|EE046786.2|EE046786
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|71298564|gb|DR785257.1|DR785257
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|149107703|gb|EE189579.2|EE189579
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|71330409|gb|DR801958.1|DR801958
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|26557504|gb|CA829739.1|CA829739
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|149107702|gb|EE189578.2|EE189578
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|29543442|gb|CB603838.1|CB603838
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|71768769|gb|DR966706.1|DR966706
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|149021338|gb|EE045792.2|EE045792
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|71426927|gb|DR807977.1|DR807977
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|101384391|gb|EB814240.1|EB814240
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|149095146|gb|EE180760.2|EE180760
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|211100828|gb|FL431020.1|FL431020
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|74244470|gb|DT652384.1|DT652384
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|50336612|gb|CO531738.1|CO531738
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|76014752|gb|DT941922.1|DT941922
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|12969984|gb|BG266756.1|BG266756
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|60351636|gb|DN218609.1|DN218609
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|29544474|gb|CB604854.1|CB604854
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|50331196|gb|CO526322.1|CO526322
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|71437068|gb|DR818118.1|DR818118
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|4776003|gb|AI665006.1|AI665006
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|71447967|gb|DR829017.1|DR829017
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|67011046|gb|CO439795.1|CO439795
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|40336945|gb|CK371015.1|CK371015
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|71426926|gb|DR807976.1|DR807976
EST:     GTCATGTGAACCATTCAATTTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|91056846|gb|EB167264.1|EB167264
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|71440078|gb|DR821128.1|DR821128
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|91056845|gb|EB167263.1|EB167263
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCCCATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|29544083|gb|CB604463.1|CB604463
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|29543885|gb|CB604265.1|CB604265
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|211255955|gb|FL470283.1|FL470283
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|67018883|gb|CO447632.1|CO447632
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|89248399|gb|DY620185.1|DY620185
EST:     GTCATGTGAACCATTTCA-TCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAAG-GGTGGGGGAGCCGCCACATGGGAAACTTGGGTGGGGCC-TCGATG
genomic: GTCATGTGAACCATT-CAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGG-AGCCGCCACATGGGAAACTTGGCTGGG-CCATCGATG
EST: gi|149102601|gb|EE188241.2|EE188241
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|50336630|gb|CO531756.1|CO531756
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|29577041|gb|CB617153.1|CB617153
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|71298562|gb|DR785256.1|DR785256
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|110934226|gb|EE154452.1|EE154452
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|37395751|gb|CF635158.1|CF635158
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|74233583|gb|DT641497.1|DT641497
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|211509990|gb|FL212155.1|FL212155
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|71768768|gb|DR966705.1|DR966705
EST:     AAGCCTATTAGC                         GAAGGGGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: AAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|101400004|gb|EB821849.1|EB821849
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|71330410|gb|DR801959.1|DR801959
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|211255956|gb|FL470284.1|FL470284
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|149040136|gb|EE046787.2|EE046787
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|148964625|gb|EC905915.2|EC905915
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAGGCCTATTAGC                         GAAGGTGGTGGGGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAG
EST: gi|29544216|gb|CB604596.1|CB604596
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|5081114|gb|AI738160.1|AI738160
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|148993134|gb|EE033733.2|EE033733
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|28568998|gb|CB280873.1|CB280873
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|9733426|gb|BE512283.1|BE512283
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|78027681|gb|DV496068.1|DV496068
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|67010751|gb|CO439500.1|CO439500
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|149008749|gb|EE040946.2|EE040946
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|101399699|gb|EB821696.1|EB821696
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGC
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGC
EST: gi|148931241|gb|EC874027.2|EC874027
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
EST: gi|29545016|gb|CB605194.1|CB605194
EST:     GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGC                         GAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG
genomic: GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatct ... tgctttgcagGAAGGTGGTGGGGAGCCGCCACATGGGAAACTTGGCTGGGCCATCGATGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCATGTGAACCATTCAATCTTTTGGAAGAACCTCAAGCCTATTAGCgtaagtatcttgttaagacaatatgttgtttcaactgtgtttcttttccttttttgtgtcgttttctggaaaattgtgtggatattggatgctttgcag

- - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - AAGAAC