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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatgtttttagttgtcaaatgcttctcttgatgattgttctttgtttctttgtcactgtaagagatataaaccatcatttgtaatctaatgtac...

Basic information

species Zea mays
transcript GRMZM2G124365_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124365_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g55870.1 (Oryza sativa), 5'ss of exon 3
GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcat--------gtttttagttgtcaaatgcttctcttgatgattgttctttgtttctttgtcactgtaag-agatataaaccatcatttg-taatctaatgtac
|||||||||||||||||||| ||||||||||| |||||| |  ||||||||||||| || | |||||||||| | || || |||| ||||||||||        ||| ||||   || | | |||||||  | | ||      | |   ||||| | | || | | | |||  || |||||   ||||         
GTTGGGAGATACAAGAGCCCTGATGAGCACCCATTCTTTCCGGAGGATCTGCCTGAACCACTGTTGCCACCTCTCCAGTATCCAAAGgtaatgcataaactcgtgttcttagacatctagttcttctctgtaggctttcagcat-tccttttgttagtataggcaaacatagtccttcattgactaat---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32842677|gb|CD982358.1|CD982358
EST:     CAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: CAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842515|gb|CD982196.1|CD982196
EST:     ACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: ACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|149077331|gb|EE166010.2|EE166010
EST:     CCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: CCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842440|gb|CD982121.1|CD982121
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|149071764|gb|EE160157.2|EE160157
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|211304786|gb|FL143335.1|FL143335
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32851768|gb|CD991449.1|CD991449
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|211304784|gb|FL143333.1|FL143333
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842684|gb|CD982365.1|CD982365
EST:     NTTCCAAGGATCTGCCTGAGCNCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32851767|gb|CD991448.1|CD991448
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|67010340|gb|CO439089.1|CO439089
EST:     CCCCGGTTGCCACCTATGCAATACCCAA-G                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: CCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842553|gb|CD982234.1|CD982234
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACTCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA