Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGCTGATACATATGATAGCAATGCTTTCCACATGGATGGTTTTGGAGGATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccatttggatttctttaaaaaaacaaaacaattgatcatggcatgcgaaagaataacatgtgctaatgtttgtaacatag

Basic information

species Zea mays
transcript GRMZM2G124365_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124365_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g55870.1 (Oryza sativa), 5'ss of exon 2
CAATGCTGATACATATGATAGCAATGCTTTCCACATGGATGGTTTTGGAGGATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccatttggatttctttaaaaaaacaaaacaattgatcatggcatgcgaaagaataacatgtgctaatgtttgtaac-atag-------
||||||||||| ||||||||  |||||||||||  ||||||| ||||  || |||||||||||||  || ||||||||||| ||||| || |||  ||||||  | |     || ||      ||  | ||| | ||||| |||| | |||| ||| | |   |  || | ||| || |  | ||         
CAATGCTGATATATATGATAAAAATGCTTTCCATGTGGATGGATTTGATGGCTCTTTGGTTGAATTCATGGTTAGAGAAACCGAAAAACTACATCAACAGgtagagca----gggttgt----aactagcaatataattgttcattgtatgccaaaaattgcaaaatgttgatggttctggccatcttgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67040651|gb|CO466906.1|CO466906
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32842440|gb|CD982121.1|CD982121
EST:     TTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: TTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|71304463|gb|DR788345.1|DR788345
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32842618|gb|CD982299.1|CD982299
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32842597|gb|CD982278.1|CD982278
EST:     GATCTTTGGCTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|67040128|gb|CO466383.1|CO466383
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32842683|gb|CD982364.1|CD982364
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAAGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32851768|gb|CD991449.1|CD991449
EST:     GAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGGGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|67041520|gb|CO467775.1|CO467775
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|211042173|gb|FL385501.1|FL385501
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGGAGATACAAGAGCCCAGATTGAGCACCCTTTCTTTT
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGG-AGATACAAGAGCCCAGAT-GAGCACCCTTTCTTTT
EST: gi|32842669|gb|CD982350.1|CD982350
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32842445|gb|CD982126.1|CD982126
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAGCTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32842206|gb|CD981887.1|CD981887
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|37396226|gb|CF635400.1|CF635400
EST:     GATCTTTGGTTGAATATATGGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|211131047|gb|FL391845.1|FL391845
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCA
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCA
EST: gi|32842514|gb|CD982195.1|CD982195
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32842415|gb|CD982096.1|CD982096
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32842444|gb|CD982125.1|CD982125
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|148931381|gb|EC874300.2|EC874300
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|148996150|gb|EE035419.2|EE035419
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|149077332|gb|EE166011.2|EE166011
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32842205|gb|CD981886.1|CD981886
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|211304787|gb|FL143336.1|FL143336
EST:     ATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: ATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32851767|gb|CD991448.1|CD991448
EST:     GAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGGGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32842783|gb|CD982464.1|CD982464
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32842790|gb|CD982471.1|CD982471
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|211304784|gb|FL143333.1|FL143333
EST:     ATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: ATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32842552|gb|CD982233.1|CD982233
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GGTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTTCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32842439|gb|CD982120.1|CD982120
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|211236776|gb|FL420045.1|FL420045
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTTCTTTTCC
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTT-CTTTTCC
EST: gi|32842617|gb|CD982298.1|CD982298
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATCCAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32842376|gb|CD982057.1|CD982057
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32842412|gb|CD982093.1|CD982093
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|211304786|gb|FL143335.1|FL143335
EST:     ATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: ATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|89763811|gb|DY690849.1|DY690849
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32842408|gb|CD982089.1|CD982089
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|32842587|gb|CD982268.1|CD982268
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
EST: gi|211217423|gb|FL401820.1|FL401820
EST:     GATCTTTGGTTGAATATATAGTTAGAGAWACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCT
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCT
EST: gi|211035045|gb|FL415129.1|FL415129
EST:     GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAG                         GTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG
genomic: GATCTTTGGTTGAATATATAGTTAGAGAAACTGAAAAGCTCCATGCACAGgtgaatccat ... tgtaacatagGTTGGGAGATACAAGAGCCCAGATGAGCACCCTTTCTTTTCCAAGGATCTG