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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTGAGAGATGGACGCCAACAGGCGCCAAGGTGGGATTCAGCAGTTGCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgttttctcatccttttctagtatacatgtcattgcaaatctcgcttagggttagataacagcaaccttgtgaatgtgttcgttccagtcacttag...

Basic information

species Zea mays
transcript GRMZM2G124103_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124103_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g51270.2 (Oryza sativa), 5'ss of exon 2
GAGCTGAGAGATGGACGCCAACAGGCGCCAAGGTGGGATTCAGCAGTTGCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgttttctcatccttttctagtat-acatgtcattgcaaatctcgcttagggttagataacagca--accttgtgaatgtgttcgttccagtcacttag
 |||  | |||||||||| ||||| |||||| |||| || ||||| ||| ||||||| ||||| |||||||||||||| || ||||| ||||| |||||||    | | ||   ||     | | | |    | |    ||   | |     |  |||     ||    ||   |||||  |||  | || | | | |   
CAGCACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctctgtccctctccgtaaatgttatgaataagcataacattagagagagagtagtatgtagatgtactaggtgaacatgtctgctctattgaat---

upper sequence: GRMZM2G124103_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g51270.1 (Oryza sativa), 5'ss of exon 2
GAGCTGAGAGATGGACGCCAACAGGCGCCAAGGTGGGATTCAGCAGTTGCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgttttctcatccttttctagtat-acatgtcattgcaaatctcgcttagggttagataacagca--accttgtgaatgtgttcgttccagtcacttag
   |  | |||||||||| ||||| |||||| |||| || ||||| ||| ||||||| ||||| |||||||||||||| || ||||| ||||| |||||||    | | ||   ||     | | | |    | |    ||   | |     |  |||     ||    ||   |||||  |||  | || | | | |   
---CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctctgtccctctccgtaaatgttatgaataagcataacattagagagagagtagtatgtagatgtactaggtgaacatgtctgctctattgaat---

upper sequence: GRMZM2G124103_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA13G20310.3 (Glycine max), 5'ss of exon 2
GAGCTGAGAGATGGACGCCAACAGGCGCCAAGGTGGGATTCAGCAGTTGCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgttttctcatccttttctagtatacatgtcattgcaaatctcgct-tagggttagataacagc-aaccttgtgaatgtgttcgttccagtcacttag--
          ||||   |||||||| | |||||||| |||||||||||| ||||||| || || ||||| || |  ||||||||||| || | |  ||||| | |||  || |  || |||    | ||  || |  ||  | | ||  ||     |  ||         ||  | | ||| ||| ||  |     |||   
---------AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCAAAAAATGgtattttttcttcttaattatct----ttcacatcttcacattttttgccataattccatctattttttggtctacttagtgtcttcattaaaaatctttatta

upper sequence: GRMZM2G124103_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA13G20310.2 (Glycine max), 5'ss of exon 2
--GAGCTGAGAGATGGACGCCAACAGGCGCCAAGGTGGGATTCAGCAGTTGCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgttttctcatccttttctagtatacatgtcattgcaaatctcgct-tagggttagataacagc-aaccttgtgaatgtgttcgttccagtcacttag--
            ||||   |||||||| | |||||||| |||||||||||| ||||||| || || ||||| || |  ||||||||||| || | |  ||||| | |||  || |  || |||    | ||  || |  ||  | | ||  ||     |  ||         ||  | | ||| ||| ||  |     |||   
ATTCATCACAGAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCAAAAAATGgtattttttcttcttaattatct----ttcacatcttcacattttttgccataattccatctattttttggtctacttagtgtcttcattaaaaatctttatta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211422294|gb|FK993270.1|FK993270
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|37399788|gb|CF637230.1|CF637230
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|18164474|gb|BM334313.1|BM334313
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211419701|gb|FK993263.1|FK993263
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211302013|gb|FK993252.1|FK993252
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211422303|gb|FK993279.1|FK993279
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|71770360|gb|DR968297.1|DR968297
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211512286|gb|FL437429.1|FL437429
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211422300|gb|FK993276.1|FK993276
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211419698|gb|FK993260.1|FK993260
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211422302|gb|FK993278.1|FK993278
EST:     GCTGGCTGCGGAGCAGGAGGCTCAKCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCWAGCGAAAGAGGAGGCGGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|45567279|gb|CK985493.1|CK985493
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211302012|gb|FK993251.1|FK993251
EST:     CTGGCTGCGGACG-A-GAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: CTGGCTGCGGA-GCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|78121730|gb|DV540114.1|DV540114
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|113702958|gb|EE680462.1|EE680462
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211422299|gb|FK993275.1|FK993275
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211419692|gb|FK993254.1|FK993254
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211419702|gb|FK993264.1|FK993264
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211422292|gb|FK993268.1|FK993268
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGTAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211422295|gb|FK993271.1|FK993271
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|32863979|gb|CF003661.1|CF003661
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|37398144|gb|CF636381.1|CF636381
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|116816205|gb|EC858924.1|EC858924
EST:     GCTGGCTGCGGAGCAGGAGGCTTAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211419703|gb|FK993265.1|FK993265
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|60347630|gb|DN214603.1|DN214603
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211419693|gb|FK993255.1|FK993255
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211422298|gb|FK993274.1|FK993274
EST:     GCTGGCTGCGGA--SRGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|32863459|gb|CF003141.1|CF003141
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|32937380|gb|CF042199.1|CF042199
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|44900255|gb|CK826800.1|CK826800
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|32863978|gb|CF003660.1|CF003660
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|16920247|gb|BM074571.1|BM074571
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211422301|gb|FK993277.1|FK993277
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|61119544|gb|DN560505.1|DN560505
EST:     CTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: CTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211419695|gb|FK993257.1|FK993257
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|37400054|gb|CF637372.1|CF637372
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|9732724|gb|BE511476.1|BE511476
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAATTATGAGGCAGAGAGGGAAATGG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|37378850|gb|CF626141.1|CF626141
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|78121729|gb|DV540113.1|DV540113
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|37378689|gb|CF626050.1|CF626050
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211419696|gb|FK993258.1|FK993258
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211419691|gb|FK993253.1|FK993253
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTG                         CTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG
EST: gi|211422296|gb|FK993272.1|FK993272
EST:     GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGMGCTG                         CTAAGTCAGCAAGGCTTAGGCNAGCGAAAGWGGAGGCMGAGAGGGAAATAG
genomic: GCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 184

GAGCTGAGAGATGGACGCCAACAGGCGCCAAGGTGGGATTCAGCAGTTGCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAGCCGAATACCGTGCCCAGATGGAGGCTGAGTTCCAGAGGAAGGTCGCAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 249

GAGCTGAGAGATGGACGCCAACAGGCGCCAAGGTGGGATTCAGCAGTTGCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAGCCGAATACCGTGCCCAGATGGAGGCTGAGTTCCAGAGGAAGGTCGCAGA


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 120

GAGCTGAGAGATGGACGCCAACAGGCGCCAAGGTGGGATTCAGCAGTTGCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAGCCGAATACCGTGCCCAGATGGAGGCTGAGTTCCAGAGGAAGGTCGCAGA


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 402

GAGCTGAGAGATGGACGCCAACAGGCGCCAAGGTGGGATTCAGCAGTTGCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgtttt ... tgttcaatagCTAAGTCAGCAAGGCTTAGGCAAGCGAAAGAGGAGGCAGAGAGGGAAATAGCCGAATACCGTGCCCAGATGGAGGCTGAGTTCCAGAGGAAGGTCGCAGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCTGAGAGATGGACGCCAACAGGCGCCAAGGTGGGATTCAGCAGTTGCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgttttctcatccttttctagtatacatgtcattgcaaatctcgcttagggttagataacagcaaccttgtgaatgtgttcgttccagtcacttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT