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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaacatctgtactggatgtctggatatgcgttcgcacaaatatgtttgtggaaattccttggtgtctcgctgacgctggaacatgcacaggccta...

Basic information

species Zea mays
transcript GRMZM2G124091_T05
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124091_T05 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g55974.1 (Oryza sativa), 5'ss of exon 2
ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaacatctgtactggatgtctggatatgcgttcgcacaaatatgtttgtggaaattccttggtgtctcgctgacgctggaacatgcacaggccta------
 ||||| ||||||||||||||||||||||||||||| |||||||||||  ||||||| ||||||||||| |||||||||||   |||||    ||  || ||  |     |  ||   ||  ||      | |   |  | |  || |  |    | | || |     ||| | ||      
GTATATCTCCTGGGACGACTACTTCATGGCGATCGCGTTCCTTTCGGCCAAGCGGTCCAAGGATCCTAATCGGCAGgtaaagtgcatcttcgttgcttg-ctaaac---tgcccgtgtaaggattccaacgaacgattgtcgacgtttaac--gtgtttgagctcatgcagtcatactgttt

upper sequence: GRMZM2G124091_T05 (Zea mays), 5'ss of exon 2
lower sequence: AT3G48540.1 (Arabidopsis thaliana), 5'ss of exon 2
ATATATTTCCTGGGACGACTACTTCATGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaacatctgtactggatgtctggatat-----gcgttcgcacaaatatgtttgtggaaattccttggtgtctcgctgacgctggaacatgcacaggccta
 ||  | || ||||| || || ||||||||||| || |||||||| || || || || |||||||||||| ||||||||||     | |||    ||| | || | |      |  | |  |||  ||| | |||| ||  | ||     | |        |  ||   |  | ||     
GTACTTATCATGGGATGATTATTTCATGGCGATTGCATTCCTTTCTGCAGAACGATCCAAGGATCCTAACAGGCAGgtaaattttgt-tgtttgtgatatttgaacaacatgagtatccaaacagttatatatgtgtaagctgctcaaaatgtattatgttcatgatactatatagt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211125807|gb|FL321198.1|FL321198
EST:     TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGACAG                         GTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGG
genomic: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaaca ... tttcactcagGTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGG
EST: gi|211359478|gb|FL332719.1|FL332719
EST:     TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAG                         GTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGG
genomic: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaaca ... tttcactcagGTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGG
EST: gi|71298203|gb|DR785078.1|DR785078
EST:     TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAG                         GTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGGTGAGGATGAA
genomic: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaaca ... tttcactcagGTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGGTGAGGATGAA
EST: gi|211477983|gb|FL231678.1|FL231678
EST:     TGGCGATCGCCTTCCTTTCGGCTGAGCGATCTAAGGATCCTAACCGGCAG                         GTTGGAGCATGCTTGGTTAGC
genomic: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaaca ... tttcactcagGTTGGAGCATGCTTGGTTAGC
EST: gi|211477979|gb|FL231674.1|FL231674
EST:     TGGCGATCGCCTTCCTTTCGGCTGAGCGATCTAAGGATCCTAACCGGCAG                         -TTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGG
genomic: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaaca ... tttcactcagGTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAATCCTAGG
EST: gi|211477985|gb|FL231680.1|FL231680
EST:     TGGCGATCGCCTTCCTTTCGGCTGAGCGATCTAAGGATCCTAACCGGCAG                         GTTGGAGCATGC
genomic: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaaca ... tttcactcagGTTGGAGCATGC
EST: gi|211477978|gb|FL231673.1|FL231673
EST:     TGGCGATCGCCTTCCTTTCGGCTGAGCGATCTAAGGATCCTAACCGGCAG                         GTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAAATCCTAGG
genomic: TGGCGATCGCCTTCCTTTCGGCTGAGCGGTCTAAGGATCCTAACCGGCAGgtaaacaaca ... tttcactcagGTTGGAGCATGCTTGGTTAGCCAAGAGGGAATAA-TCCTAGG