1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATTAGAGTTTCATTCAGGACATGGCGGCAATGTGTTCCAGGCACGGTTCATGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgttagttccttgctttctcgttcaactttagttgatcgcgtgcaccgtctcagtttttatcagctgtgatgctcttgtgcctcttccag
species | Zea mays |
transcript | GRMZM2G123709_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAAEST: gi|211523959|gb|FL270276.1|FL270276
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAA
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAG-CTTGCCAAEST: gi|211520964|gb|FL270269.1|FL270269
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAA
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|211523956|gb|FL270273.1|FL270273
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|211523955|gb|FL270272.1|FL270272
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCMAGATACAGGATGCTGGAGACGTGTEST: gi|28909535|gb|CB330979.1|CB330979
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|211523957|gb|FL270274.1|FL270274
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGC-AAGATAC
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTAGAGTTTCATTCAGGACATGGCGGCAATGTGTTCCAGGCACGGTTCATGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgttagttccttgctttctcgttcaactttagttgatcgcgtgcaccgtctcagtttttatcagctgtgatgctcttgtgcctcttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT