1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATTAGAGTTTCATTCAGGACATGGCGGCAATGTGTTCCAGGCACGGTTCATGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgttagttccttgctttctcgttcaactttagttgatcgcgtgcaccgtctcagtttttatcagctgtgatgctcttgtgcctcttccag
species | Zea mays |
transcript | GRMZM2G123709_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|28909535|gb|CB330979.1|CB330979
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|211520963|gb|FL270268.1|FL270268
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAAEST: gi|211523959|gb|FL270276.1|FL270276
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAA
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAG-CTTGCCAAEST: gi|76924931|gb|DV170201.1|DV170201
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAA
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|76934227|gb|DV173775.1|DV173775
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|148996165|gb|EE035435.2|EE035435
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|211523956|gb|FL270273.1|FL270273
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|76019007|gb|DT946177.1|DT946177
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|78111955|gb|DV530351.1|DV530351
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|148969559|gb|EE020388.2|EE020388
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|93014861|gb|EB640381.1|EB640381
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|211523955|gb|FL270272.1|FL270272
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCMAGATACAGGATGCTGGAGACGTGTEST: gi|149112432|gb|EE191333.2|EE191333
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|211523957|gb|FL270274.1|FL270274
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGC-AAGATACEST: gi|76017451|gb|DT944621.1|DT944621
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATAC
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|148940255|gb|EC885028.2|EC885028
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|78105452|gb|DV523870.1|DV523870
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|78086093|gb|DV514486.1|DV514486
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTTEST: gi|148949179|gb|EC894616.2|EC894616
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
EST: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAG GTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
genomic: TGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgt ... cctcttccagGTGAGGCTTGCCAAGATACAGGATGCTGGAGACGTGTCCACAACATTGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTAGAGTTTCATTCAGGACATGGCGGCAATGTGTTCCAGGCACGGTTCATGCCCTGCTCAGACGATCGGACCATTGTCACTTGTGCTGCTGATGGCGAGgttggtttgttagttccttgctttctcgttcaactttagttgatcgcgtgcaccgtctcagtttttatcagctgtgatgctcttgtgcctcttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT