Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCTGACGAGGCTGAGGCGCAACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcggatgatcccctcgtcacggtggtacttaaatccgtctaggatctggatctgctaacataatgtgttgccttgtcgttcttcccag

Basic information

species Zea mays
transcript GRMZM2G123624_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G123624_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os10g36870.1 (Oryza sativa), 5'ss of exon 2
CGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCTGACGAGGCTGAGGCGCAACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcggatgatcccct----cgtcacg-gtggtacttaaatccgtctaggatctggatctgctaacataatgtgttgcctt--gtcgttcttcccag--------------------------------
|||||||||||||||||| ||||||| |||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||| || ||||||  |||    || |||| |      | ||   |||||   |   | | ||  | | ||    ||||  |||   |  || | ||   | |     |  ||                                
CGGGGGCGGGTACGGCGCGGACGGCGCGTTCGCCGACGAGGCCGAGGCGCAGCAGCACTCCAAGCTCGAGAAGCTCTACATCTCCACGCGCGCCGCTAAGgtacttgg-atttgttcccttgcagttttacttatggtaaccagccctgccttagctatgttcttgctgccatttcgccttccattccattgcctcgcttagaaatgtgctgcccttttgcaccgccattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211365062|gb|FL344713.1|FL344713
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211210947|gb|FL341928.1|FL341928
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCG
EST: gi|19822322|gb|BQ048346.1|BQ048346
EST:     ACCAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211460542|gb|FL352486.1|FL352486
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211492538|gb|FL352068.1|FL352068
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|76935690|gb|DV174431.1|DV174431
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|149085095|gb|EE174602.2|EE174602
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGACAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|88753110|gb|DY537251.1|DY537251
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|71765024|gb|DR962961.1|DR962961
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211152488|gb|FL335975.1|FL335975
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211050403|gb|FL363821.1|FL363821
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211178619|gb|FL327172.1|FL327172
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|71768414|gb|DR966351.1|DR966351
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|33102856|gb|CF062816.1|CF062816
EST:     AGCAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211163871|gb|FL345465.1|FL345465
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211026561|gb|FL468573.1|FL468573
EST:     TACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: TACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211265433|gb|FL346828.1|FL346828
EST:     AACAGCACTCCGAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGNATATAGNTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|71434707|gb|DR815757.1|DR815757
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211177242|gb|FL341479.1|FL341479
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211244356|gb|FL352760.1|FL352760
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211543242|gb|FL317104.1|FL317104
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211520282|gb|FL356688.1|FL356688
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211181873|gb|FL366111.1|FL366111
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211023761|gb|FL452145.1|FL452145
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211293997|gb|FL361747.1|FL361747
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|33102965|gb|CF062925.1|CF062925
EST:     AGCAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|71328410|gb|DR800842.1|DR800842
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211389151|gb|FL356154.1|FL356154
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211430360|gb|FL347862.1|FL347862
EST:     AACAGCACTCCAAGCTCGAGAWACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|74244904|gb|DT652818.1|DT652818
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211494820|gb|FL326686.1|FL326686
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211293996|gb|FL361746.1|FL361746
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|74239024|gb|DT646938.1|DT646938
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211470983|gb|FL363735.1|FL363735
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211314173|gb|FL331842.1|FL331842
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211529255|gb|FL011602.1|FL011602
EST:     ACCAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
EST: gi|211250291|gb|FL313176.1|FL313176
EST:     AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAG                         CACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG
genomic: AACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 222

CGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCTGACGAGGCTGAGGCGCAACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 145

CGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCTGACGAGGCTGAGGCGCAACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 87

CGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCTGACGAGGCTGAGGCGCAACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 61

CGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCTGACGAGGCTGAGGCGCAACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcg ... ttcttcccagCACTTCCAAAGGGATATAGTTCGGGGCGTCGAGGGCTACATAGTCACGGGGTCGAAGCAAGTCGAGATCG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCTGACGAGGCTGAGGCGCAACAGCACTCCAAGCTCGAGAAACTCTACATCTCTACGCGCGCGGCCAAGgtaaatggcggatgatcccctcgtcacggtggtacttaaatccgtctaggatctggatctgctaacataatgtgttgccttgtcgttcttcccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT