1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTCTTCAGAGTGGCTTGGGAGAGGCTCCGATGGGCTCATCGGCTTGTCAGATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAGgtttgtagcatatttcactgttgattttgatttcattttgtcgctgcagttacattttcagtagaagcaaacattgtagttgaatgaaattatattaccc...
species | Zea mays |
transcript | GRMZM2G123537_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAG GAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAATEST: gi|87153122|gb|DY397911.1|DY397911
genomic: ATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAGgtttgtagca ... tcaatggcagGAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAAT
EST: ATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAG GAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAATEST: gi|18654902|gb|BM499707.1|BM499707
genomic: ATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAGgtttgtagca ... tcaatggcagGAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAAT
EST: ATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAG GAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAATEST: gi|18661927|gb|BM501655.1|BM501655
genomic: ATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAGgtttgtagca ... tcaatggcagGAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAAT
EST: ATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAG GAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAAT
genomic: ATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAGgtttgtagca ... tcaatggcagGAAAATATTAGCCGTCCTGCTGTTATAGCCGGTCATCTTTCACGTTCTAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTCAGAGTGGCTTGGGAGAGGCTCCGATGGGCTCATCGGCTTGTCAGATGCCAGTGCCCTTGGGTCTCCGCGCAAGAGCTTTGCTGATGCATTGCAGgtttgtagcatatttcactgttgattttgatttcattttgtcgctgcagttacattttcagtagaagcaaacattgtagttgaatgaaattatattaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgaaa