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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCAACCCAGGCGCCCTCGCCGGGTTCATGTCCTCCTCCTCCGCCGCCGCCGCCATGCCATTCCACCATTTCTCCACCACCGCCGCCTCCCTCGTACCAgtaagtagagcactccgtcgccttaacgctagcttttgtagcgcggggttttgagtctcaaatggtatggcccgcccgtgtgcctgtgtatatatgcag

Basic information

species Zea mays
transcript GRMZM2G123140_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71773681|gb|DR971578.1|DR971578
EST:     GCCATTGC-ATTCCACCATTTCTCCACCACCGCCGCCTCCCCTCGTACCA                         AAGGAGGAGGGCG
genomic: GCCAT-GCCATTCCACCATTTCTCCACCACCGCCGCCTCCC-TCGTACCAgtaagtagag ... atatatgcagAAGGAGGAGGGCG
EST: gi|50335160|gb|CO530286.1|CO530286
EST:     CGCCATGCCATTCCACCATTTCTCCACCACCGCGCGCCTCCCTCGTACCA                         AAGGAGGAGGGCGGCATCATGGGTGCGCTCCACGTGGCCAAGGACGAGGAC
genomic: CGCCATGCCATTCCACCATTTCTCCACCACCGC-CGCCTCCCTCGTACCAgtaagtagag ... atatatgcagAAGGAGGAGGGCGGCATCATGGGTGCGCTCCAGGTGGCCAAGGACGAGGAC