Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAACTTGTGTCCGTGATAAGGCAGTTGAATCTCTGTGCCGTATTGGTGCACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggctcatttatgtaaagtattaagtgtaatgttattgtaaataaatatgctgccattgttactgcatctagtgtctgtggatgtgcttttgttg...

Basic information

species Zea mays
transcript GRMZM2G122135_T04
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211104774|gb|FL158960.1|FL158960
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
EST: gi|211254031|gb|FL158980.1|FL158980
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
EST: gi|211104779|gb|FL158965.1|FL158965
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGGTGAGTGGTTTACAGCTCGTGTATCATCCTG
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGG-TGAGTGGTTTACAGCTCGTGTATCATCCTG
EST: gi|149081317|gb|EE170431.2|EE170431
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
EST: gi|67034361|gb|CO462911.1|CO462911
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
EST: gi|211254029|gb|FL158978.1|FL158978
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGG
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGG
EST: gi|87155925|gb|DY400714.1|DY400714
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
EST: gi|14191184|gb|BG833414.1|BG833414
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
EST: gi|13126723|gb|BG317293.1|BG317293
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
EST: gi|14191183|gb|BG833413.1|BG833413
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
EST: gi|211104776|gb|FL158962.1|FL158962
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGG-TGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCT
EST: gi|21843193|gb|BQ703774.1|BQ703774
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
EST: gi|13126316|gb|BG316886.1|BG316886
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
EST: gi|211254024|gb|FL158973.1|FL158973
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
EST: gi|31361797|gb|CD446154.1|CD446154
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
EST: gi|211254032|gb|FL158981.1|FL158981
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
EST: gi|211254025|gb|FL158974.1|FL158974
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
EST: gi|22472790|gb|BU037270.1|BU037270
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGA
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGA
EST: gi|211254021|gb|FL158970.1|FL158970
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTAC
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTAC
EST: gi|26457426|gb|CA829009.1|CA829009
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTC
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTC
EST: gi|32929909|gb|CF034721.1|CF034721
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
EST: gi|67022275|gb|CO451024.1|CO451024
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
EST: gi|13126270|gb|BG316840.1|BG316840
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctctgtccagAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGTGTATCATCCTGTGGTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAAACTTGTGTCCGTGATAAGGCAGTTGAATCTCTGTGCCGTATTGGTGCACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggctcatttatgtaaagtattaagtgtaatgttattgtaaataaatatgctgccattgttactgcatctagtgtctgtggatgtgcttttgttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA