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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAACTTGTGTCCGTGATAAGGCAGTTGAATCTCTGTGCCGTATTGGTGCACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggctcatttatgtaaagtattaagtgtaatgttattgtaaataaatatgctgccattgttactgcatctagtgtctgtggatgtgcttttgttg...

Basic information

species Zea mays
transcript GRMZM2G122135_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211104776|gb|FL158962.1|FL158962
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|211104776|gb|FL158962.1|FL158962
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|67022275|gb|CO451024.1|CO451024
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|67022275|gb|CO451024.1|CO451024
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|211254024|gb|FL158973.1|FL158973
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|211254024|gb|FL158973.1|FL158973
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|32929909|gb|CF034721.1|CF034721
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGAG                        
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGT-AA-AGgtaagaggct ... ctgtccaga
EST: gi|211254029|gb|FL158978.1|FL158978
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|211254029|gb|FL158978.1|FL158978
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|211254031|gb|FL158980.1|FL158980
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|211254031|gb|FL158980.1|FL158980
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|67034361|gb|CO462911.1|CO462911
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGAG                        
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGT-AA-AGgtaagaggct ... ctgtccaga
EST: gi|14191184|gb|BG833414.1|BG833414
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGAG                        
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGT-AA-AGgtaagaggct ... ctgtccaga
EST: gi|22472790|gb|BU037270.1|BU037270
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|22472790|gb|BU037270.1|BU037270
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|87155925|gb|DY400714.1|DY400714
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|87155925|gb|DY400714.1|DY400714
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|211104774|gb|FL158960.1|FL158960
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|211104774|gb|FL158960.1|FL158960
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|13126270|gb|BG316840.1|BG316840
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGAG                        
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGT-AA-AGgtaagaggct ... ctgtccaga
EST: gi|13126316|gb|BG316886.1|BG316886
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGAG                        
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGT-AA-AGgtaagaggct ... ctgtccaga
EST: gi|211254021|gb|FL158970.1|FL158970
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|211254021|gb|FL158970.1|FL158970
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|26457426|gb|CA829009.1|CA829009
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|26457426|gb|CA829009.1|CA829009
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|149081317|gb|EE170431.2|EE170431
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|149081317|gb|EE170431.2|EE170431
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|13126723|gb|BG317293.1|BG317293
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGAG                        
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGT-AA-AGgtaagaggct ... ctgtccaga
EST: gi|211254025|gb|FL158974.1|FL158974
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|211254025|gb|FL158974.1|FL158974
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|14191183|gb|BG833413.1|BG833413
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGAG                        
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGT-AA-AGgtaagaggct ... ctgtccaga
EST: gi|31361797|gb|CD446154.1|CD446154
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|31361797|gb|CD446154.1|CD446154
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|21843193|gb|BQ703774.1|BQ703774
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGAG                        
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGT-AA-AGgtaagaggct ... ctgtccaga
EST: gi|211104779|gb|FL158965.1|FL158965
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|211104779|gb|FL158965.1|FL158965
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|211254032|gb|FL158981.1|FL158981
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-
EST: gi|211254032|gb|FL158981.1|FL158981
EST:     CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAG                         A
genomic: CACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggct ... ctgtccagag-

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAAACTTGTGTCCGTGATAAGGCAGTTGAATCTCTGTGCCGTATTGGTGCACAAATGAAGGAAACTGACATAGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggctcatttatgtaaagtattaagtgtaatgttattgtaaataaatatgctgccattgttactgcatctagtgtctgtggatgtgcttttgttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA