1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAAACGGGCGCTTACTTGTCAACACTGGAATCGTCTATTTTCAGCAAATGGGAAGCTTCGTGATGGGGGAAGAAAGTTTCTAAAGAAGGTTCGCAGTGGGgtaagtgttatccagtctttctttctatatgcagaagcactgactaatatatgttaggatcgttagttatgcacattttgcatcctattacttgttctgcagccttttccacttcaacggtaaattaaatcacttatatcaatgtttccag
species | Zea mays |
transcript | GRMZM2G122064_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAAGCTTCGTGATGGGGGAAGAAAGTTTCTAAAGAAGGTTCGCAGTGGG GGGATTGAACCGGGCATAAGGGCTGAAGTTTGGCCATTTCTGCTTGGAGTEST: gi|148954876|gb|EC900353.2|EC900353
genomic: GGAAGCTTCGTGATGGGGGAAGAAAGTTTCTAAAGAAGGTTCGCAGTGGGgtaagtgtta ... atgtttccagGGGATTGAACCGGGCATAAGGGCTGAAGTTTGGCCATTTCTGCTTGGAGT
EST: GGAAGCTTCGTGATGGGGGAAGAAAGTTTCTAAAGAAGGTTCGCAGTGGG GGGATTGAACCGGGCATAAGGGCTGAAGTTTGGCCATTTCTGCTTGGAGTEST: gi|149112489|gb|EE295360.2|EE295360
genomic: GGAAGCTTCGTGATGGGGGAAGAAAGTTTCTAAAGAAGGTTCGCAGTGGGgtaagtgtta ... atgtttccagGGGATTGAACCGGGCATAAGGGCTGAAGTTTGGCCATTTCTGCTTGGAGT
EST: GGAAGCTTCGTGATGGGGGAAGAAAGTTTCTAAAGAAGGTTCGCAGTGGG GGGATTGAACCGGGCATAAGGGCTGAAGTTTGGCCATTTCTGCTTGGAGTEST: gi|148967009|gb|EE018161.2|EE018161
genomic: GGAAGCTTCGTGATGGGGGAAGAAAGTTTCTAAAGAAGGTTCGCAGTGGGgtaagtgtta ... atgtttccagGGGATTGAACCGGGCATAAGGGCTGAAGTTTGGCCATTTCTGCTTGGAGT
EST: GGAAGCTTCGTGATGGGGGAAGAAAGTTTCTAAAGAAGGTTCGCAGTGGG GGGATTGAACCGGGCATAAGGGCTGAAGTTTGGCCATTTCTGCTTGGAGTEST: gi|148965580|gb|EE016411.2|EE016411
genomic: GGAAGCTTCGTGATGGGGGAAGAAAGTTTCTAAAGAAGGTTCGCAGTGGGgtaagtgtta ... atgtttccagGGGATTGAACCGGGCATAAGGGCTGAAGTTTGGCCATTTCTGCTTGGAGT
EST: GGAAGCTTCGTGATGGGGGAAGAAAGTTTCTAAAGAAGGTTCGCAGTGGG GGGATTGAACCGGGCATAAGGGCTGAAGTTTGGCCATTTCTGCTTGGAGT
genomic: GGAAGCTTCGTGATGGGGGAAGAAAGTTTCTAAAGAAGGTTCGCAGTGGGgtaagtgtta ... atgtttccagGGGATTGAACCGGGCATAAGGGCTGAAGTTTGGCCATTTCTGCTTGGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAACGGGCGCTTACTTGTCAACACTGGAATCGTCTATTTTCAGCAAATGGGAAGCTTCGTGATGGGGGAAGAAAGTTTCTAAAGAAGGTTCGCAGTGGGgtaagtgttatccagtctttctttctatatgcagaagcactgactaatatatgttaggatcgttagttatgcacattttgcatcctattacttgttctgcagccttttccacttcaacggtaaattaaatcacttatatcaatgtttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG