Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGACGAGGAACTTGTTGATCAGAAGAAATATCTTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctccttggaagctcaaaatttggcacagtgttggccaatgatttgacatattcttcagttgacagtttgacacaagggtttctatatgatactg...

Basic information

species Zea mays
transcript GRMZM2G122039_T07
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G122039_T07 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA15G05620.1 (Glycine max), 5'ss of exon 2
GGAGGACGAGGAACTTGTTGATCAGAAGAAATATCTTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctccttggaagctcaaaatttggcacagtgttggccaatgatttgacatattcttcagttgacagtttgacacaagggtttctatatgatactg--
||  |||||||||| |||||||||||||| ||||||||| ||    ||||| ||  ||||||||||| || |    |||||  |||| ||| |  ||| |||   | |||      | || |      | |||   |  ||||||| | || | |   |          |||||  ||  ||     
GGCCGACGAGGAACCTGTTGATCAGAAGAGATATCTTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTGGAATACCAGgtgtgcttttttg-aagtgtagaataataagctgtatcatttgaagatgatatttattctt-aatttaaacactattcttttattttctggattttaaaatc

upper sequence: GRMZM2G122039_T07 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G19380.1 (Glycine max), 5'ss of exon 2
GGAGGACGAGGAACTTGTTGATCAGAAGAAATATCTTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctccttggaagctcaaaatttggcacagtgttggccaatgatttgacatattcttcagttgacagtttgacacaagggtttc--tatatgatactg
||  |||||||||| |||||||||||||| ||||||||| ||    ||||| ||  ||||||||||| || |    |||||  |||| ||| |  ||| |   |  || | |    | |  |      | |||  ||  ||||||| | || |      ||  |     |||   | | | | |   
GGCCGACGAGGAACCTGTTGATCAGAAGAGATATCTTGAAGAGTCTTGCAAACCAAAATGTGTAAAACCATTACTAGAATACCAGgtgtgcttttttgaagtgtggaagtataa-gctggataatttgaagatgagatttattcttaatttaaatacaagattcttttattttcttgtttaaaatc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211526997|gb|FL156384.1|FL156384
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|74035153|gb|DT535643.1|DT535643
EST:     TTGAGGAACGATGCNAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|211523994|gb|FL156376.1|FL156376
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|211526993|gb|FL156380.1|FL156380
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|211523996|gb|FL156378.1|FL156378
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|211523991|gb|FL156373.1|FL156373
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|211523992|gb|FL156374.1|FL156374
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|211526998|gb|FL156385.1|FL156385
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|32808494|gb|CD960728.1|CD960728
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTGCGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|211526996|gb|FL156383.1|FL156383
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|211526994|gb|FL156381.1|FL156381
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|33092405|gb|CF052399.1|CF052399
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|37395178|gb|CF634869.1|CF634869
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|211523997|gb|FL156379.1|FL156379
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|78026630|gb|DV495017.1|DV495017
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|211523990|gb|FL156372.1|FL156372
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|6671465|gb|AW282244.1|AW282244
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|211526995|gb|FL156382.1|FL156382
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
EST: gi|211526999|gb|FL156386.1|FL156386
EST:     TTGAGGA-CGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCAC
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAA-TGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCAC
EST: gi|211523995|gb|FL156377.1|FL156377
EST:     TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAG                         AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT
genomic: TTGAGGAACGATGCAAGCCGCAATGTGTAAAATCACTTTACGAATATGAGgtctgcctcc ... ctgttatcagAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACT