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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTTAGATAATAAGGAAAGCGGGGATACAGCTTGGCAGAATTTGATGGAGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtctttccaattggttgtggaaaaataggatattataaaaagtacttcactactaccatgattctgaggtggcgtataacatattagtgtctgaaa...

Basic information

species Zea mays
transcript GRMZM2G121223_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121223_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g08760.2 (Oryza sativa), 5'ss of exon 1
ACTTTTAGATAATAAGGAAAGCGGGGATACAGCTTGGCAGAATTTGATGGAGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtctttccaattggttgtggaaaaataggatattataaaaagta-------cttcactactaccatgattctgaggtggcgtataacatattagtgtctgaaa
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ACTTCTTGATAACAAGGAGAGTGGGGATACAACATGGCAGCATTTGATGGAACGTACCACTTCCAACATGACTTACAAGGCCTGGCGCCGTGAGCCTGAGgtatgttttccaatgggattgtaggaaagaaacagatgtcaaagtatatgtatagcgtgattgcgtaaatgattagagggccctgtattagaaataagtt-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148963895|gb|EE015006.2|EE015006
EST:     AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAG                         GAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
genomic: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtcttt ... catttattagGAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
EST: gi|71772130|gb|DR970067.1|DR970067
EST:     AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAG                         GAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
genomic: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtcttt ... catttattagGAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
EST: gi|148969662|gb|EE020526.2|EE020526
EST:     AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAG                         GAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
genomic: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtcttt ... catttattagGAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
EST: gi|71433771|gb|DR814821.1|DR814821
EST:     AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAG                         GAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
genomic: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtcttt ... catttattagGAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
EST: gi|76018553|gb|DT945723.1|DT945723
EST:     AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAG                         GAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
genomic: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtcttt ... catttattagGAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
EST: gi|149104717|gb|EE290166.2|EE290166
EST:     AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAG                         GAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCC
genomic: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtcttt ... catttattagGAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCC-
EST: gi|148967941|gb|EE019253.2|EE019253
EST:     AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAG                         GAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
genomic: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtcttt ... catttattagGAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
EST: gi|148972136|gb|EE023006.2|EE023006
EST:     AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAG                         GAGGGACCTATAATGTACTGCAGCCGCACTATTTTTTGAGGATGCTACTCC
genomic: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtcttt ... catttattagGAGGGACCTATAATGTACTGCAGCCGCACTATTTTT-GAGGATGCTACTCC