1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACTTTTAGATAATAAGGAAAGCGGGGATACAGCTTGGCAGAATTTGATGGAGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtctttccaattggttgtggaaaaataggatattataaaaagtacttcactactaccatgattctgaggtggcgtataacatattagtgtctgaaa...
species | Zea mays |
transcript | GRMZM2G121223_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAG GAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCTEST: gi|71772130|gb|DR970067.1|DR970067
genomic: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtcttt ... catttattagGAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
EST: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAG GAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCTEST: gi|148969662|gb|EE020526.2|EE020526
genomic: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtcttt ... catttattagGAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
EST: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAG GAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCTEST: gi|71433771|gb|DR814821.1|DR814821
genomic: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtcttt ... catttattagGAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
EST: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAG GAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCTEST: gi|76018553|gb|DT945723.1|DT945723
genomic: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtcttt ... catttattagGAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
EST: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAG GAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCTEST: gi|149104717|gb|EE290166.2|EE290166
genomic: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtcttt ... catttattagGAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
EST: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAG GAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCCEST: gi|148967941|gb|EE019253.2|EE019253
genomic: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtcttt ... catttattagGAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCC-
EST: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAG GAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCTEST: gi|148972136|gb|EE023006.2|EE023006
genomic: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtcttt ... catttattagGAGGGACCTATAATGTACTGCAGCCGCACTATTTTTGAGGATGCTACTCCT
EST: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAG GAGGGACCTATAATGTACTGCAGCCGCACTATTTTTTGAGGATGCTACTCC
genomic: AGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtcttt ... catttattagGAGGGACCTATAATGTACTGCAGCCGCACTATTTTT-GAGGATGCTACTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTTTAGATAATAAGGAAAGCGGGGATACAGCTTGGCAGAATTTGATGGAGCGTAGAACCTCCAACATGACATACAATGCCTGGCGGCGTGAGCCTGAGgttcgtctttccaattggttgtggaaaaataggatattataaaaagtacttcactactaccatgattctgaggtggcgtataacatattagtgtctgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaagta