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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCCCTATCCCGAAAGTTATAATAGACCAAGACTCAGATCCGGATGCAACCATTGTAGAAATAACCTTGGGTGATCGTCTTGGCGATCTCCTTGATACGgtatgttattcacataaagttctcactgttgaccagatgacatttttttcctcgaacggagcatgatcttattaacatctcccatgtattagacctacaagaaataaaatgacaaactatgctttatttcacatgcag

Basic information

species Zea mays
transcript GRMZM2G120579_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120579_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g14440.1 (Oryza sativa), 5'ss of exon 3
AGTCCCTATCCCGAAAGTTATAATAGACCAAGACTCAGATCCGGATGCAACCATTGTAGAAATAACCTTGGGTGATCGTCTTGGCGATCTCCTTGATACGgtatgttattcacataaagttctcactgttgaccagatgacatttttttcctcgaacggagcatgatcttattaacatctcccatgtattagacctacaagaaataaaatgacaaactatgctttatttcacatgcag
||| |||| |||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| || ||||| |||||||| |||||  |||  |        |||||   | |    |  |     |     |  | |  |  || || ||  |          || ||||   |   |  |||                                   
AGTTCCTACCCCGAAAGTTATAATAGATCAAGACTCAGATCCGGATGCGACCATTGTAGAGATAACTTTGGGTGACCGTCTCGGTGATCTTCTTGATACCgtatgc-atttgcgctgg--cctcacaaataatttcacaattcaatagcaataaatctaattatcattttcattgtgctgattatttatttttctgtcgtgaag----------------------------------

upper sequence: GRMZM2G120579_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G23440.1 (Glycine max), 5'ss of exon 3
AGTCCCTATCCCGAAAGTTATAATAGACCAAGACTCAGATCCGGATGCAACCATTGTAGAAATAACCTTGGGTGATCGTCTTGGCGATCTCCTTGATACGgtatgttattcac---ataaagttctcactgt-----tgaccagatgacatttttttcctcgaacggagcatgatcttattaacatctcccatgtattagacctacaagaaataaaatgacaaactatgctttatttcacatgcag
  | || |  ||   ||||||||| ||||||||||| ||||| ||||| ||| | || || ||||| || |||||||| ||||| |  || ||||| || ||| |  ||||      ||||  | | | |||     | | |  |||   || ||||   |    |    |||  ||||||  ||   |  |  | || |                                              
CATTCCAACTCCCGTAGTTATAATTGACCAAGACTCTGATCCTGATGCTACCGTGGTGGAGATAACTTTTGGTGATCGGCTTGGAGCACTTCTTGACACAgtaagccattcttcgagtaaatctatgattgtgtcacttatctaatgcttttcttttttacttttgatatatg--cttattgtcaatacagaatttttgggg--------------------------------------------

upper sequence: GRMZM2G120579_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA07G02580.1 (Glycine max), 5'ss of exon 3
AGTCCCTATCCCGAAAGTTATAATAGACCAAGACTCAGATCCGGATGCAACCATTGTAGAAATAACCTTGGGTGATCGTCTTGGCGATCTCCTTGATACGgtatgttattcac---ataaagttctcactgt-----tgaccagatgacatttttttcctcgaacggagcatgatcttattaacatctcccatgtattagacctacaagaaataaaatgacaaactatgctttatttcacatgcag
  | || |  ||   ||||||||| ||||||||||| ||||| ||||| ||| | || || ||||| || |||||||| ||||| |  || ||||| || ||| |  |||| |    ||||  | |   |||     | | |  |||   || ||||   |    |    |||  || |||  |    |  |  | || |                                              
CATTCCAACTCCCGTAGTTATAATTGACCAAGACTCTGATCCCGATGCTACCGTGGTGGAGATAACTTTTGGTGATCGGCTTGGGGCACTTCTTGACACAgtaagccattctctgagtaaatctatgcttgtgtcacttatctaatgcttttcttttttacttttgatatatg--ctgattgtcgatacagaatttttgggg--------------------------------------------

upper sequence: GRMZM2G120579_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 3
AGTCCCTATCCCGAAAGTTATAATAGACCAAGACTCAGATCCGGATGCAACCATTGTAGAAATAACCTTGGGTGATCGTCTTGGCGATCTCCTTGATACGgtatgtta---ttcacataa-------agttctcactgttgaccagat-----------gacatttttttc-ctcgaac--ggagcatgatcttattaac------atctcccatgtattagacctacaagaaataaaatga-caaactatgcttt-atttcacatgcag---------------------------
| | || |  || |||||||||||||| |||||||| |||||  ||||||| ||||| || ||||| || ||||||||  | || |  || || || || ||||  ||   || ||||         || | |   ||||   |  ||           | |||||| ||  |||  ||   ||  | ||  |||||         |  |||  ||| || | |  |     | ||   | | |   |||   |   |||||  || ||                            
AATTCCCACTCCCAAAGTTATAATAGATCAAGACTCGGATCCAAATGCAACTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataacttttacatttctggatcagatatttttgtttgtctaattttttgcttctgccattttattgactcatacccagaaaaggaaattattggttctgtgagttcctttgtctttggctcagtttgagtacctttatctttctacaataggatttctgatacatcatctagcttttttaaattgcttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74245362|gb|DT653276.1|DT653276
EST:     CCATTGTAGAAATAACCTTGGGTGATCGTCTTGGCGATCTCCTTGATACG                         ATGAGTGCGCTAAAGAACTTGGGGCTAAATGTTGTTAAAGCTAGTGTCTGT
genomic: CCATTGTAGAAATAACCTTGGGTGATCGTCTTGGCGATCTCCTTGATACGgtatgttatt ... tcacatgcagATGAGTGCGCTAAAGAACTTGGGGCTAAATGTTGTTAAAGCTAGTGTCTGT
EST: gi|76291488|gb|DV031056.1|DV031056
EST:     GGGTGATCGTCTTGGCGATCTCCTTGATACG                         ATGAGTGCGCTAAAGAACTTGGGGCTAAATGTTGTTAAAGCTAGTGTCTGT
genomic: GGGTGATCGTCTTGGCGATCTCCTTGATACGgtatgttatt ... tcacatgcagATGAGTGCGCTAAAGAACTTGGGGCTAAATGTTGTTAAAGCTAGTGTCTGT
EST: gi|32790474|gb|CD942710.1|CD942710
EST:     CCATTGTAGAAATAACCTTGGGTGATCGTCTTGGCGATCTCCTTGATACG                         ATGAGTGCGCTAAAGAACTTGGGGCTAAATGTTGTTA
genomic: CCATTGTAGAAATAACCTTGGGTGATCGTCTTGGCGATCTCCTTGATACGgtatgttatt ... tcacatgcagATGAGTGCGCTAAAGAACTTGGGGCTAAATGTTGTTA