1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGCGCGGCTGTGGCGATGGCGTCTGACGCGGCTCAGGTGAAGGCCGCACGCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTGgtgcgtatggtgatccctgtgtgttatccataaacttcatcaattatgaattcatgatggtgatgcattgttcaagatgttttgactaaaccctttgcag...
species | Zea mays |
transcript | GRMZM2G120517_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTG GTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAGEST: gi|22489220|gb|BU049143.1|BU049143
genomic: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTGgtgcgtatgg ... ttggatgaagGTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAG
EST: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTG GTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAGEST: gi|15188187|gb|BI417164.1|BI417164
genomic: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTGgtgcgtatgg ... ttggatgaagGTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAG
EST: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTG GTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAGEST: gi|16137300|gb|BI894165.1|BI894165
genomic: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTGgtgcgtatgg ... ttggatgaagGTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAG
EST: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTG GTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAGEST: gi|15323578|gb|BI478812.1|BI478812
genomic: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTGgtgcgtatgg ... ttggatgaagGTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAG
EST: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTG GTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAGEST: gi|15323577|gb|BI478811.1|BI478811
genomic: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTGgtgcgtatgg ... ttggatgaagGTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAG
EST: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTG GTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAGEST: gi|89106264|gb|DY576481.1|DY576481
genomic: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTGgtgcgtatgg ... ttggatgaagGTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAG
EST: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTG GTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAGEST: gi|15177552|gb|BI398491.1|BI398491
genomic: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTGgtgcgtatgg ... ttggatgaagGTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAG
EST: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTG GTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAGEST: gi|16137301|gb|BI894166.1|BI894166
genomic: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTGgtgcgtatgg ... ttggatgaagGTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAG
EST: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTG GTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAGEST: gi|18383818|gb|BM417018.1|BM417018
genomic: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTGgtgcgtatgg ... ttggatgaagGTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAG
EST: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTG GTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAGEST: gi|22489146|gb|BU049069.1|BU049069
genomic: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTGgtgcgtatgg ... ttggatgaagGTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAG
EST: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTG GTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAG
genomic: GCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTGgtgcgtatgg ... ttggatgaagGTCCGTCTAGGATGGCATGATGCTGGTACGTATGACAAGAATATTGAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCGCGGCTGTGGCGATGGCGTCTGACGCGGCTCAGGTGAAGGCCGCACGCGAGGACATCAGGGAGCTTCTCAGGACGACTCACTCCCACCCCATCCTGgtgcgtatggtgatccctgtgtgttatccataaacttcatcaattatgaattcatgatggtgatgcattgttcaagatgttttgactaaaccctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT