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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCTCACTCCGTGCTCTCGGACTGGACTGACGCGGACGGCAACGCCTGCGACTGGCGCGGCGTCATCTGCTCCGCGCCCCAGGGCTCTGTCATTTCCCTgtaaggaactccacccgttcgacctactcagttagttagatctctcaatgtccatggtctgcttcgtgcttgctgggtactctcagttagcggctgggta...

Basic information

species Zea mays
transcript GRMZM2G119759_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119759_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g58700.2 (Oryza sativa), 5'ss of exon 2
ACCCTCACTCCGTGCTCTCGGACTGGACTGACGCGGACGGCAACGCCTGCGACTGGCGCGGCGTCATCTGCTCCGCGCCCCAGGGCTCTGTCATTTCCCTgtaaggaactccacccgttcg---acctactcagttagttagatctctcaatgtccatggtctgcttcgtgctt-gctgggtact-ctcagttagcggctgggta
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ACCCCCGGTCGGCGCTCGCGGACTGGAGCGATGCGGACGGGAACGCCTGCGACTGGCACGGGGTGATCTGCTCCTCGCCGCAGGGCTCCGTGATCTCCCTgtaagaaaccccccccccccccttgcacctgcactcagctagatctcacta-----atgtttcacctactgctttactagttactactgtggtacttactagccg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149109671|gb|EE293458.2|EE293458
EST:     GACTGGCGCGGCGTCATCTGCTCCGCGCCCCAGGGCTCTGTCATTTCCCT                         GAAGCTGTCAAACTCATCTCTCAAGGGATTCATCGCACCTGAACTTGGGCG
genomic: GACTGGCGCGGCGTCATCTGCTCCGCGCCCCAGGGCTCTGTCATTTCCCTgtaaggaact ... catcttgcagGAAGCTGTCAAACTCATCTCTCAAGGGATTCATCGCACCTGAACTTGGGCG
EST: gi|91050219|gb|EB160637.1|EB160637
EST:     GACTGGCGCGGCGTCATCTGCTCCGCGCCCCAGGGCTCTGTCATTTCCCT                         GAAGCTGTCAAACTCATCTCTCAAGGGATTCATCGCACCTGAACTTGGGCG
genomic: GACTGGCGCGGCGTCATCTGCTCCGCGCCCCAGGGCTCTGTCATTTCCCTgtaaggaact ... catcttgcagGAAGCTGTCAAACTCATCTCTCAAGGGATTCATCGCACCTGAACTTGGGCG
EST: gi|149051627|gb|EE155737.2|EE155737
EST:     GACTGGCGCGGCGTCATCTGCTCCGCGCCCCAGGGCTCTGTCATTTCCCT                         GAAGCTGTCAAACTCATCTCTCAAGGGATTCATCGCACCTGAACTTGGGCG
genomic: GACTGGCGCGGCGTCATCTGCTCCGCGCCCCAGGGCTCTGTCATTTCCCTgtaaggaact ... catcttgcagGAAGCTGTCAAACTCATCTCTCAAGGGATTCATCGCACCTGAACTTGGGCG
EST: gi|88757284|gb|DY541425.1|DY541425
EST:     GACTGGCGCGGCGTCATCTGCTCCGCGCCCCAGGGCTCTGTCATTTCCCT                         GAAGCTGTCAAACTCATCTCTCAAGGGATTCATCGCACCTGAACTTGGGCG
genomic: GACTGGCGCGGCGTCATCTGCTCCGCGCCCCAGGGCTCTGTCATTTCCCTgtaaggaact ... catcttgcagGAAGCTGTCAAACTCATCTCTCAAGGGATTCATCGCACCTGAACTTGGGCG
EST: gi|88752886|gb|DY537027.1|DY537027
EST:     GACTGGCGCGGCGTCATCTGCTCCGCGCCCCAGGGCTCTGTCATTTCCCT                         GAAGCTGTCAAACTCATCTCTCAAGGGATTCATCGCACCTGAACTTGGGCG
genomic: GACTGGCGCGGCGTCATCTGCTCCGCGCCCCAGGGCTCTGTCATTTCCCTgtaaggaact ... catcttgcagGAAGCTGTCAAACTCATCTCTCAAGGGATTCATCGCACCTGAACTTGGGCG