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GATAGTCAATACTGCTTGTGCTGTTGAGCTAATATTAAGTTCCTGCTGGGAGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcactaccacatccacaaacttcataagcagttcttgttcagtctgtagatttaactgctagtgtacctaatgttgggcaattttatgtcctcggtgccactcatcgtaattttactgccaatttttgttattaacag
species | Zea mays |
transcript | GRMZM2G119725_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAG CATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGGEST: gi|149108358|gb|EE292696.2|EE292696
genomic: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcac ... ttattaacagCATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGG
EST: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAG CATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGGEST: gi|211020902|gb|FL324490.1|FL324490
genomic: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcac ... ttattaacagCATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGG
EST: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAG CATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGGEST: gi|76930436|gb|DV172388.1|DV172388
genomic: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcac ... ttattaacagCATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGG
EST: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAG CATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGGEST: gi|148937093|gb|EC881269.2|EC881269
genomic: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcac ... ttattaacagCATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGG
EST: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAG CATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGGEST: gi|211226340|gb|FL315376.1|FL315376
genomic: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcac ... ttattaacagCATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGG
EST: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAG CATGCCAAGATCGAATGAGGGAATGCEST: gi|211485903|gb|FL317494.1|FL317494
genomic: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcac ... ttattaacagCATGCCAAGATCGAATGAGGGAATGC
EST: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAG CATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGEST: gi|211457499|gb|FL333172.1|FL333172
genomic: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcac ... ttattaacagCATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCG
EST: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAG CATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGNTGTAGGEST: gi|211404454|gb|FL338957.1|FL338957
genomic: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcac ... ttattaacagCATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGG
EST: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAG CATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGGEST: gi|211017912|gb|FL318017.1|FL318017
genomic: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcac ... ttattaacagCATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGG
EST: AGAACTTCTGCAGTTCCTATGGCAAAGC-TCTCAATGGCAGTGGCCGTAG CATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGGEST: gi|211220721|gb|FL343735.1|FL343735
genomic: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcac ... ttattaacagCATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGG
EST: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAG CATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGGEST: gi|148961302|gb|EE012027.2|EE012027
genomic: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcac ... ttattaacagCATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGG
EST: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAG CATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGGEST: gi|211391716|gb|FL351031.1|FL351031
genomic: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcac ... ttattaacagCATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGG
EST: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAG CATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGGEST: gi|211354854|gb|FL354353.1|FL354353
genomic: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcac ... ttattaacagCATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGG
EST: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAG CATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGGEST: gi|211107153|gb|FL361596.1|FL361596
genomic: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcac ... ttattaacagCATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGG
EST: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAG CATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGGEST: gi|211160210|gb|FL316342.1|FL316342
genomic: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcac ... ttattaacagCATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGG
EST: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAG CATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGGEST: gi|149104738|gb|EE290190.2|EE290190
genomic: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcac ... ttattaacagCATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGG
EST: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAG CATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGG
genomic: AGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcac ... ttattaacagCATGCCAAGATCGAATGAGGGAATGCGGCTCATATTTTCGGCAGTTGTAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAGTCAATACTGCTTGTGCTGTTGAGCTAATATTAAGTTCCTGCTGGGAGAACTTCTGCAGTTCCTATGGCAAAGCCTCTCAATGGCAGTGGCCGTAGgtatgttcactaccacatccacaaacttcataagcagttcttgttcagtctgtagatttaactgctagtgtacctaatgttgggcaattttatgtcctcggtgccactcatcgtaattttactgccaatttttgttattaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG