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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGTgtaagtttttctacggagggtatccatatccatttgtgcatctgctggctttctgattcgcgtgtggttctctttatttcgatgcag

Basic information

species Zea mays
transcript GRMZM2G119169_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60396530|gb|DN229399.1|DN229399
EST:     GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT                         CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGTgtaagttttt ... ttcgatgcagCAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|33095182|gb|CF055176.1|CF055176
EST:     GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT                         CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGTgtaagttttt ... ttcgatgcagCAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|211383659|gb|FL000696.1|FL000696
EST:     GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT                         CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGTgtaagttttt ... ttcgatgcagCAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|211383667|gb|FL000704.1|FL000704
EST:     GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT                         CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGTgtaagttttt ... ttcgatgcagCAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|32944401|gb|CF049220.1|CF049220
EST:     GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT                         CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGTgtaagttttt ... ttcgatgcagCAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG