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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGATGAAGTTGTTGCGGTCACCGGCGATGGCACAAACGATGCTCCTGCGCTACACGAAGCCGACATTGGGCTTGCGATGGGCATTGCTGGCACTGAGgtactatctacttcgtgttcctaatgacgacattagacattggaattgctcttacatataactgtggtcagtattaagtgtacatcagagtatcagacta...

Basic information

species Zea mays
transcript GRMZM2G118919_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G118919_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA04G04810.1 (Glycine max), 5'ss of exon 4
ATTTGATGAAGTTGTTGCGGTCACCGGCGATGGCACAAACGATGCTCCTGCGCTACACGAAGCCGACATTGGGCTTGCGATGGGCATTGCTGGCACTGAGgtactatctacttcgtgttcctaatgacgacattagacattggaattgctcttacatataactgt--ggtcagtattaagtgtacatcagagtatcagacta-----
|||| | || |||||| | || || || ||||| ||||| |||||||| || || || ||||| || ||||| ||||| |||||||||||||| ||||||||| |  | |           |  |||     ||    | |  ||||  ||||   || || | |     ||  | |   | |   | ||| | | | | |      
ATTTCAAGAGGTTGTTTCAGTAACTGGTGATGGTACAAATGATGCTCCAGCACTTCATGAAGCAGATATTGGACTTGCAATGGGCATTGCTGGAACTGAGgta-tgccaag---acacctatgttgatcttgttt--tagtaaaattcttcttttctagaaattttaaaacacgaatggttttgtttgaga-tgttatatttggttc

upper sequence: GRMZM2G118919_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA01G40130.1 (Glycine max), 5'ss of exon 4
ATTTGATGAAGTTGTTGCGGTCACCGGCGATGGCACAAACGATGCTCCTGCGCTACACGAAGCCGACATTGGGCTTGCGATGGGCATTGCTGGCACTGAGgta----ctat-ctacttcgtgttcctaatgacgacattagacattgga-attgctcttacatataactgtggtcagtattaagtgtacatcagagtatcagacta
 ||||  ||||| || || || || || ||||| || || ||||| || || || || ||||| |||||||| ||||| |||||||||||||| ||||||||     | || |||     |||| |   |   |    || |  || |  |||   ||   |  |  ||   |  ||   ||| |   ||    |   ||||    
TTTTGGGGAAGTGGTAGCTGTAACAGGTGATGGAACTAATGATGCCCCAGCACTTCATGAAGCTGACATTGGACTTGCAATGGGCATTGCTGGAACTGAGgtgagtgcaatactataatatgtttccctttgtgctgctacattttagtcatttaactcttaattttctactgcaag--ctaatttctcaatgtatgttcag----

upper sequence: GRMZM2G118919_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA06G04900.1 (Glycine max), 5'ss of exon 4
ATTTGATGAAGTTGTTGCGGTCACCGGCGATGGCACAAACGATGCTCCTGCGCTACACGAAGCCGACATTGGGCTTGCGATGGGCATTGCTGGCACTGAGgtactatctacttcgtgttcctaatgacgacattagacattggaattgctcttacatataactgtggtca-gtattaagtgtacatcagagtatcagacta-----
|||| | || |||||| | || || || ||||| ||||| |||||||| || || || ||||| || ||||| ||||| |||||||||||||| ||||||||| |  | |          ||  |||     ||    | |  ||||  ||||   || || | ||   |   | |  || |   |     | | | | |      
ATTTCAAGAGGTTGTTTCAGTAACTGGTGATGGTACAAATGATGCTCCAGCACTTCATGAAGCAGATATTGGACTTGCAATGGGCATTGCTGGAACTGAGgta-tgccaag---acacctctgttgatcttgttt--tagtaaaattattcttttctagaaatttgaaaacacaattggttttgtttgagatgttatatttggttc

upper sequence: GRMZM2G118919_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT4G37640.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTTGATGAAGTTGTTGCGGTCACCGGCGATGGCACAAACGATGCTCCTGCGCTACACGAAGCCGACATTGGGCTTGCGATGGGCATTGCTGGCACTGAGgt-actatctacttcgtgttcctaatgacgacattagacattggaattgctctta-catataactgtggtcagtattaagtgtacatcagagtatcagacta
 ||||||||||||||||| ||||| || ||||| ||||| ||||| ||||| || || ||||| || ||||| || || ||||| |||||||| ||||| || | ||| |  |  |  ||  | ||| |     |      |  |    ||   |   | || ||||  | |   || ||                      
GTTTGATGAAGTTGTTGCTGTCACTGGAGATGGAACAAATGATGCACCTGCACTTCATGAAGCTGATATTGGACTAGCAATGGGAATTGCTGGAACTGAAgtgagtatatgataagattttgttatgtcatttgtgagagctaaagaatctaaaagtttctatctgta-taaccttttag----------------------

upper sequence: GRMZM2G118919_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT2G22950.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTTGATGAAGTTGTTGCGGTCACCGGCGATGGCACAAACGATGCTCCTGCGCTACACGAAGCCGACATTGGGCTTGCGATGGGCATTGCTGGCACTGAGgt-actatc-tacttcgtgttcctaatgacgacattagacattggaattgctcttacatataactgtggtcagtattaagtgtacatcagagtatcagacta
 ||||||||||||||||| || || ||||| || ||||||||||| || ||||| ||||| || ||||| ||  | || ||||||||||| || ||||| || | |||| ||  ||    |     | | |  ||||  ||   || |    | |   | |||      | ||                             
TTTTGATGAAGTTGTTGCTGTGACTGGCGACGGGACAAACGATGCACCAGCGCTCCACGAGGCTGACATAGGATTAGCAATGGGCATTGCCGGGACTGAAgtgagtatcatatatccaaataagtctaatgttattatgcaaacgactcaaacatttttttaaactcttttag-----------------------------

upper sequence: GRMZM2G118919_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv18s0001g09150.t01 (Vitis vinifera), 5'ss of exon 4
ATTTGATGAAGTTGTTGCGGTCACCGGCGATGGCACAAACGATGCTCCTGCGCTACACGAAGCCGACATTGGGCTTGCGATGGGCATTGCTGGCACTGAGgtactatctacttcgtgttcctaatgacga-cattagacattggaattgctcttacatataactg--tggtcag--tattaagtgtacatcagagtatcagacta
||| || ||||||||||| || || || ||||| ||||| ||||||||||| || || ||||| |||||||||||||| |||||||||||||| || |||||  ||  ||  |  |||||||     | | ||| |||    | | || | || | || |   ||  |    |   ||| || | |    |  | | || || | 
ATTGGAAGAAGTTGTTGCAGTGACTGGGGATGGTACAAATGATGCTCCTGCACTTCATGAAGCAGACATTGGGCTTGCAATGGGCATTGCTGGAACAGAGgtgatacataaatactgttcctttaatctagcatgaga----gaagtttcactaagatgtggttgatttactaacttataaaatcttttacttattttctgaat-

upper sequence: GRMZM2G118919_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv07s0129g00180.t01 (Vitis vinifera), 5'ss of exon 4
ATTTGATGAAGTTGTTGCGGTCACCGGCGATGGCACAAACGATGCTCCTGCGCTACACGAAGCCGACATTGGGCTTGCGATGGGCATTGCTGGCACTGAGgtactatctacttcgtgttcctaatgacgacattagacattggaattgctcttacatataactgtggtcagtattaagtgtacatcagagtatcagacta-----
||||| |||||||||||| || ||||| ||||| ||||| ||||| || || || || || || || |||||||| || |||||||||||||| |||||||||   | || |  |  || |  |  ||  ||||     |    | ||||  |  | | ||  |      |||       |     ||   || |||||      
ATTTGGTGAAGTTGTTGCTGTGACCGGTGATGGAACAAATGATGCACCAGCACTTCATGAGGCAGATATTGGGCTAGCAATGGGCATTGCTGGAACTGAGgtaa-gtgtattatgcctttcctaatacagcattgactgt----actgctaattgaaaaaataggcacgtgtacctgcaatgagctagttgataagacttatgtg