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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttcattttacctcattatctttgtttttccttctcttaattgtttttttggatttcttgtgcaaaatactgtatacacatgttttcctgagctattggtagttatgaag

Basic information

species Zea mays
transcript GRMZM2G118014_T06
intron # 2
splice site 5'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76020071|gb|DT947241.1|DT947241
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGATTATGAA                   
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGG--A-A--A-G-Agtatccttca ... agtt
EST: gi|76020071|gb|DT947241.1|DT947241
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGATTATGAA                   
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGG--A-A--A-G-Agtatccttca ... agtt
EST: gi|211387620|gb|FL172483.1|FL172483
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|211387620|gb|FL172483.1|FL172483
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|211387620|gb|FL172483.1|FL172483
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|87153157|gb|DY397946.1|DY397946
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|87153157|gb|DY397946.1|DY397946
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|87153157|gb|DY397946.1|DY397946
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|22491280|gb|BU051203.1|BU051203
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGAGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|22491280|gb|BU051203.1|BU051203
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGAGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|22491280|gb|BU051203.1|BU051203
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGAGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|149079348|gb|EE168324.2|EE168324
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGATTATGAA                   
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGG--A-A--A-G-Agtatccttca ... agtt
EST: gi|149079348|gb|EE168324.2|EE168324
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGATTATGAA                   
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGG--A-A--A-G-Agtatccttca ... agtt
EST: gi|211384990|gb|FL172469.1|FL172469
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|211384990|gb|FL172469.1|FL172469
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|211384990|gb|FL172469.1|FL172469
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|76284913|gb|DV024481.1|DV024481
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGATTATGAA                   
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGG--A-A--A-G-Agtatccttca ... agtt
EST: gi|76284913|gb|DV024481.1|DV024481
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGATTATGAA                   
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGG--A-A--A-G-Agtatccttca ... agtt
EST: gi|211384994|gb|FL172473.1|FL172473
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|211384994|gb|FL172473.1|FL172473
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|211384994|gb|FL172473.1|FL172473
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|211390254|gb|FL172494.1|FL172494
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|211390254|gb|FL172494.1|FL172494
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|211390254|gb|FL172494.1|FL172494
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|87152221|gb|DY397010.1|DY397010
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|87152221|gb|DY397010.1|DY397010
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|87152221|gb|DY397010.1|DY397010
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|71445995|gb|DR827045.1|DR827045
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGATTATGAA                   
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGG--A-A--A-G-Agtatccttca ... agtt
EST: gi|71445995|gb|DR827045.1|DR827045
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGATTATGAA                   
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGG--A-A--A-G-Agtatccttca ... agtt
EST: gi|211063251|gb|FL401238.1|FL401238
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         AAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGAGGATATGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaagAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGAGGATATGA
EST: gi|211387625|gb|FL172488.1|FL172488
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|211387625|gb|FL172488.1|FL172488
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|211387625|gb|FL172488.1|FL172488
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|211390250|gb|FL172490.1|FL172490
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|211390250|gb|FL172490.1|FL172490
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|211390250|gb|FL172490.1|FL172490
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|211384992|gb|FL172471.1|FL172471
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|211384992|gb|FL172471.1|FL172471
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-
EST: gi|211384992|gb|FL172471.1|FL172471
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         T
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... agttatgaag-