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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttcattttacctcattatctttgtttttccttctcttaattgtttttttggatttcttgtgcaaaatactgtatacacatgttttcctgagctattggtag

Basic information

species Zea mays
transcript GRMZM2G118014_T02
intron # 2
splice site 5'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211384991|gb|FL172470.1|FL172470
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGA-TTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|71445995|gb|DR827045.1|DR827045
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|22491280|gb|BU051203.1|BU051203
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGAGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|211063251|gb|FL401238.1|FL401238
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         --A--A-G---CGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|6626437|gb|AW257969.1|AW257969
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|87153157|gb|DY397946.1|DY397946
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|211384992|gb|FL172471.1|FL172471
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGA-TTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|211384994|gb|FL172473.1|FL172473
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGA-TTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|211390250|gb|FL172490.1|FL172490
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|19350716|gb|BM895248.1|BM895248
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|211390254|gb|FL172494.1|FL172494
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGA-TTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|19272599|gb|BM888855.1|BM888855
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|211390251|gb|FL172491.1|FL172491
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGANAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|211387625|gb|FL172488.1|FL172488
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|76284913|gb|DV024481.1|DV024481
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|211387618|gb|FL172481.1|FL172481
EST:     ATGGATCTTGGACCTTGTTCTAAGATTCACTCGCTTCAGCTGCGGAAAGA                         TTATGAAGAAACGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|19351463|gb|BM895995.1|BM895995
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|149079348|gb|EE168324.2|EE168324
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|211387620|gb|FL172483.1|FL172483
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|211387614|gb|FL172477.1|FL172477
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGA-TTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|211384990|gb|FL172469.1|FL172469
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGA-TTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|22491491|gb|BU051414.1|BU051414
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|87152221|gb|DY397010.1|DY397010
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|76020071|gb|DT947241.1|DT947241
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
EST: gi|19351812|gb|BM896344.1|BM896344
EST:     ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGA                         TTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA
genomic: ATGGATCTTGGTCCTTGTTCTAAGATTCACTCGCTTCAACTGCGGAAAGAgtatccttca ... ctattggtagTTATGAAGAAGCGAAAGCAAAGGGAACAGAGAATTTTGACAGAGAACTCGA