Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATATCCTACTTTGACTCCTTCTCAGTCATCAGAAGGACGCAACCATCGTACCAGTGGTATTGTTTTGCATCTTGGATGTATCTCAATTTCTTGCCCAAGgtaacttttagtccatgccactttccaacctggtagatgaatggacaaattgttagttcgattgaatgggttattataaccagggtgtccaagaattaat...

Basic information

species Zea mays
transcript GRMZM2G116952_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G116952_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g15430.4 (Oryza sativa), 5'ss of exon 2
CATATCCTACTTTGACTCCTTCTCAGTCATCAGAAGGACGCAACCATCGTACCAGTGGTATTGTTTTGCATCTTGGATGTATCTCAATTTCTTGCCCAAGgtaacttttagt-ccatgccactttccaacctggtagatg--aatggacaaattgttagttcgattgaatgggttattataaccagggtgtccaagaattaat
| ||||||| ||||||| | ||||| ||||||||||||||||| || |||| |||||||| |||||||||| ||||||||||| ||||||| || ||||||||| || |||| |||||  | ||| | | || | |  |   || |  |    ||| |  |||  || |||   | | |   | | |   |    |||  || 
CCTATCCTAATTTGACTTCCTCTCAATCATCAGAAGGACGCAATCAGCGTAGCAGTGGTACTGTTTTGCATTTTGGATGTATCACAATTTCGTGTCCAAGgtaatttgtagttccatgttatttttctatcttgaatttcctaaagtcctgtatgtgaactcg--tgtatgcagtctcactcctatgcattttttgaagaaa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93011693|gb|EB637213.1|EB637213
EST:     ACCAGTGGTATTGTTTTGCATCTTGGATGTATCTCAATTTCTTGCCCAAG                         TATTTCATCAGATGCTCAGGACGCTCCCAATATGTACAG
genomic: ACCAGTGGTATTGTTTTGCATCTTGGATGTATCTCAATTTCTTGCCCAAGgtaactttta ... gtgggcgcagTATTTCATCAGATGCTCAGGACGCTCCCAATATGTACAG