Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAGgtattcactgtttccacttattgaccaactcttgtgttttaagttaaccagcactaatgcagtttcgtccatgagctggtcaccattgttgtctactctg...

Basic information

species Zea mays
transcript GRMZM2G116840_T06
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G116840_T06 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g47770.1 (Oryza sativa), 5'ss of exon 4
GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAGgtat--tcactgtttccacttattgaccaactcttgtgttttaagttaaccagcactaatgcagtttcgtccatgagctggtcaccattgttgtctactctg
|| |||||||| |||||||| || |||||||| ||||||||||||||||| || |||||||||||||   | | ||| | | | ||||||   |    |   | ||   ||         |  |   |     ||||| |  |  ||     |||     | | | 
GTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGgtaaaatgattgtatgctcctattgatgcataaataattgttgttttcgttcttgatgcttttgcccactccattaattc-tcttgggtgtacagcatttt-

upper sequence: GRMZM2G116840_T06 (Zea mays), 5'ss of exon 2
lower sequence: AT1G75440.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAGgtat-tcactgtttccact--tattgaccaactcttgtgttttaagttaaccagcactaatgcagtttcgtccatgagctggtcaccat-tgttgtctactctg
|| || ||||| |||||||| ||  ||||||| ||||||||||||||||| || || ||| ||||||| ||||||| ||| ||  | |     | ||  |   | ||  |||    |  |   || || |||| |  |   ||||||||   | ||| |||       
GTGATTTTTCTTCATCCAGCTCCTCTGCATCCTCACATTTACAGCAATGGGCATATTTGTCTAGgtatgtcactgtgtcctctgttttctgataccttcttactcttttgttggttattatctat-cactttc-tttacttgctggtcatactatgtggtccgaat--

upper sequence: GRMZM2G116840_T06 (Zea mays), 5'ss of exon 2
lower sequence: AT5G42990.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAGgtattcactgtttccacttattgaccaactcttgtgttttaagttaaccagcactaatgcagtttcgtccatgagctggtcaccattgttgtctactctg-----
|| || ||| | |  ||||||||| | ||||| || ||||||||||||||||| || ||||||||||   | | |   || |  ||   ||   |||    |||   ||  |    |||  |   |||||    |   ||| |   | | |  ||| |           
GTGATTTTTGTTCCACCAGCACCGTTACATCCTCATATTTACAGCAATGGACATATTTGTTTAGgta---attttactcattgtttctacactacttactctttgcatttgctcttactt-tttggtttctctgaaatgctagct-caagtcatgtgtgtgtcaatcaa

upper sequence: GRMZM2G116840_T06 (Zea mays), 5'ss of exon 2
lower sequence: AT1G45050.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAGgtattcactgtttccacttattgaccaactcttgtgttttaagttaaccagcactaatgcagtttcgtccatgagctggtcaccattgttgtctac-tctg----
||  | ||| |   ||| |||||    |||||||| || |||||||||||||| || ||||||||||||   || |  | |||  | ||   ||  | ||  |    |||        || |   | |     || | | | |||   |||| | | ||  | |     
GTAGTGTTTGTTTCTCCGGCACCTTCACATCCACATATATACAGCAATGGACATATTTGTTTAGgtattgcttgctatctcttggttactgtctgctctgcatatgcttatgt----ttagttttgatcaaagcaagggtttgtcga-attgatatgtagatgtagaat

upper sequence: GRMZM2G116840_T06 (Zea mays), 5'ss of exon 2
lower sequence: Vv18s0001g13180.t01 (Vitis vinifera), 5'ss of exon 4
GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGACACATCTGTTTAGgta-ttcactgtttccacttattgaccaactcttgtgttttaagttaacca-gcactaatgcagtttcgtccatgagctggtcaccattgttgtctactctg
||| | ||| | |  ||||| ||  ||||||| ||||| ||||||||||| || ||||||||||||| |||  |  |||||     ||   |    || |||||    ||   || | | | |||    |   |  || |  |  | |  ||| |     | ||||
GTTGTTTTTGTCCCGCCAGCTCCTCTGCATCCTCACATATACAGCAATGGGCATATCTGTTTAGgtaattccataattccagcacatgtttatagattttgtttctgattggacatgaattcatgt--ctgttttaattatttcatgatgattttatgtgattctg