Sequence
atgc intronic sequence ATGC exonic sequenceGGTCATCGATGTAGCGGGGGCAGCAGGCACGCTCTACACTGGCGAAACCTACAAGTTGCAGGTGGATTTCCCCGAGCATTATCCGATGGAGGCACCTCAGgtcaatatcttcagtccccattttgataaaaattttcaattgatttttagtgtgcatcgggttttagtgccttcccttatgttgttttatttttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G116840_T06 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g47770.1 (Oryza sativa), 5'ss of exon 3
GGTCATCGATGTAGCGGGGGCAGCAGGCACGCTCTACACTGGCGAAACCTACAAGTTGCAGGTGGATTTCCCCGAGCATTATCCGATGGAGGCACCTCAGgtca-atatcttcagtccccattttgataaaaattt---------tcaatt--gatttttagtgtgcatcgggttttagtgccttcccttatgttgttttattttttt-cag
||||||||| || |||||||| || ||||||||||| | || || || ||| | ||||||||||| ||||| |||||||| || |||||||| || ||||| || |||| | | | || | || |||| | | || | | | | |||| || | | || || || | | || ||||| | ||
GGTCATCGAGGTCGCGGGGGCTGCGGGCACGCTCTATGCCGGAGAGACATACCAATTGCAGGTGGACTTCCCTGAGCATTACCCCATGGAGGCTCCCCAGgtgggatttcttgccttctctttatactatttatttatactgtgtttagtttgggtatactgcatgcactggaatccaacgctttgggtttgatcgacttgtttttctgtag
upper sequence: GRMZM2G116840_T06 (Zea mays), 5'ss of exon 1
lower sequence: PP1S193_49V6.1 (Physcomitrella patens), 5'ss of exon 3
GGTCATCGATGTAGCGGGGGCAGCAGGCACGCTCTACACTGGCGAAACCTACAAGTTGCAGGTGGATTTCCCCGAGCATTATCCGATGGAGGCACCTCAGgtcaatatcttcagtccccattttgataaaaattttcaattgatttttagtgtgcatcgggttttagtgccttcccttatgttgttttatttttttcag---------------------------
| | || || || || || || ||| | ||| |||||| | | ||||| || ||||| |||||||| ||||| |||||||||||||||| | ||| | ||| | |||| | | || ||| | | | || | | | || ||| | ||| | ||| || | |
GATAATTGAGGTGCATGGAGCTCCAAACACTTTGTACGAAGGCGAAGAGTTTCATTTGCAAGTCGATTTTCCCGAGCACTATCCAATGGAGGCACCTCAGgc--acttctgcgttcctttctatgatcacgaattgcaaaccttatggaacgttc-tagtccggtaatgcatgtgtgtat-tcctttcatcccatgaacaaaacttctcacgcttcaatgctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31356418|gb|CD440775.1|CD440775EST: ACAAGTTGCAGGTGGATTTCCCCGAGCATTATCCGATGGAGGCACCTCAG GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGA
genomic: ACAAGTTGCAGGTGGATTTCCCCGAGCATTATCCGATGGAGGCACCTCAGgtcaatatct ... tttttttcagGTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGCAATGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTCATCGATGTAGCGGGGGCAGCAGGCACGCTCTACACTGGCGAAACCTACAAGTTGCAGGTGGATTTCCCCGAGCATTATCCGATGGAGGCACCTCAGgtcaatatcttcagtccccattttgataaaaattttcaattgatttttagtgtgcatcgggttttagtgccttcccttatgttgttttatttttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG