1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CATACTGCAGGAGCAAAATGCAGTGTGCAATATCCCTACTTTCACTGCACGGAATCAAATGTCAGTTGCTGCAATGCAAGGAGCACTTGTCCCTCAAAAGgtttttatgtttcttaaaagcatatatttctgcacagtagtcatgttccttttatgttgtctttcatcaggttctacctgacatggggttcttctttcaaatgtttag
species | Zea mays |
transcript | GRMZM2G116785_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAATCAAATGTCAGTTGCTGCAATGCAAGGAGCACTGGTCCCTCAAAAG ATTCCTTCACGGATTAATGATAATAAAAGTGAGGGTCCTGTTAGCCATCCTEST: gi|71299175|gb|DR785590.1|DR785590
genomic: GGAATCAAATGTCAGTTGCTGCAATGCAAGGAGCACTTGTCCCTCAAAAGgtttttatgt ... aaatgtttagATTCCTTCACGGATCAATGATAATAAAAGTGAGGGTCCTGTTAGCCATCCT
EST: GGAATCAAATGTCAGTTGCTGCAATGCAAGGAGCACTTGTCCCTCAAAAG ATTCCTTCACGGATCAATGATAATAAAAGTGAGGGTCCTGTTAGCCATCCT
genomic: GGAATCAAATGTCAGTTGCTGCAATGCAAGGAGCACTTGTCCCTCAAAAGgtttttatgt ... aaatgtttagATTCCTTCACGGATCAATGATAATAAAAGTGAGGGTCCTGTTAGCCATCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATACTGCAGGAGCAAAATGCAGTGTGCAATATCCCTACTTTCACTGCACGGAATCAAATGTCAGTTGCTGCAATGCAAGGAGCACTTGTCCCTCAAAAGgtttttatgtttcttaaaagcatatatttctgcacagtagtcatgttccttttatgttgtctttcatcaggttctacctgacatggggttcttctttcaaatgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA