Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCCTCCGGTGACGAGATCGACCCGGACAACAGTAACCCTCGCAGGAAGAAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgccgcgccgcctaacatctatcacaaaacccggccagaccatgcatggaagaaatctctcttttttcacgagtttttatatatagacctataataatagttataagcatatgcacgcag

Basic information

species Zea mays
transcript GRMZM2G116658_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G116658_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g35760.1 (Oryza sativa), 5'ss of exon 2
GCGCCTCCGGTGACGAGATCGACCCGGACAACAGTAACCCTCGCAGGAAGAAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgccgcgccgcctaacatctatcacaaaacccggccagaccatgcatggaagaaatctctcttttttcacgagtttttatatatagacctataataatagttataagcatatgcacgcag
|||||||||| |||||  |||||||||||||||| ||||| |||| |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |         || | |||       |  | | | ||  | |  ||  |  |||| ||  |||  ||||| | |  ||||| | | |  || |   ||  |                      
GCGCCTCCGGCGACGAACTCGACCCGGACAACAGCAACCCGCGCAAGAAGAAGAAGCGTTATCACCGCCACACCCCGCAGCAAATCCAAGAACTCGAAGCgtaag---------cgtcaaactctcg--atgacatcaggaaaaaaaat--aacgaagcaaattctgatttttgatggttttttttttctctacgtgcgatcgtgcag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76913686|gb|DV165223.1|DV165223
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|74239640|gb|DT647554.1|DT647554
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|50324567|gb|CO519693.1|CO519693
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|74240987|gb|DT648901.1|DT648901
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71767034|gb|DR964971.1|DR964971
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149108009|gb|EE292364.2|EE292364
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|91877000|gb|EB406957.1|EB406957
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149107365|gb|EE189243.2|EE189243
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|84969616|gb|DT652022.2|DT652022
EST:     ATACCACCCCCACACCCCGCAGCAAATCCAAGAACTAGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: ATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149075614|gb|EE164152.2|EE164152
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|148955640|gb|EC901309.2|EC901309
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149095883|gb|EE181543.2|EE181543
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71774500|gb|DR972378.1|DR972378
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71422373|gb|DR805707.1|DR805707
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71761496|gb|DR959433.1|DR959433
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149086823|gb|EE176369.2|EE176369
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|88746181|gb|DY530322.1|DY530322
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|93281129|gb|EB673393.1|EB673393
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|91052677|gb|EB163095.1|EB163095
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149072236|gb|EE160486.2|EE160486
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|148941557|gb|EC886493.2|EC886493
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71767645|gb|DR965582.1|DR965582
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|78086118|gb|DV514511.1|DV514511
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|76287426|gb|DV026994.1|DV026994
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|78115150|gb|DV533538.1|DV533538
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71440277|gb|DR821327.1|DR821327
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|86465791|gb|DY232164.1|DY232164
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71771318|gb|DR969255.1|DR969255
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|93283652|gb|EB675916.1|EB675916
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|101389758|gb|EB816813.1|EB816813
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|91878869|gb|EB408826.1|EB408826
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71769291|gb|DR967228.1|DR967228
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|148954064|gb|EC899463.2|EC899463
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71450348|gb|DR831398.1|DR831398
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71433203|gb|DR814253.1|DR814253
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71432526|gb|DR813576.1|DR813576
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|76014434|gb|DT941604.1|DT941604
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|76289817|gb|DV029385.1|DV029385
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71319101|gb|DR796312.1|DR796312
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|148950107|gb|EC895643.2|EC895643
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|74232260|gb|DT640174.1|DT640174
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149007374|gb|EE040227.2|EE040227
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|89757984|gb|DY687335.1|DY687335
EST:     AGAAGCGGTACCACCGCCACACACCGCAGCAAATCC-AGAAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAG-AACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71765333|gb|DR963270.1|DR963270
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|50325582|gb|CO520708.1|CO520708
EST:     CGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: CGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149099741|gb|EE185794.2|EE185794
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|148959963|gb|EE153202.2|EE153202
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149027254|gb|EE046451.2|EE046451
EST:     ACACCGCAGCAAATCCAAGAACTCGAAGC                         TG-GTTCAAAGGAGGGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCA
genomic: ACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTC-AAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCA
EST: gi|71310437|gb|DR791524.1|DR791524
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|148965442|gb|EE016248.2|EE016248
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|148962577|gb|EE013455.2|EE013455
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|76925139|gb|DV170299.1|DV170299
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|78110554|gb|DV528964.1|DV528964
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|50339536|gb|CO534662.1|CO534662
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71306808|gb|DR789559.1|DR789559
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|76932851|gb|DV173203.1|DV173203
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|76284890|gb|DV024458.1|DV024458
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|149108578|gb|EE189722.2|EE189722
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71422948|gb|DR805902.1|DR805902
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|71326764|gb|DR800043.1|DR800043
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|78106731|gb|DV525149.1|DV525149
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
EST: gi|93015636|gb|EB641156.1|EB641156
EST:     AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGC                         TGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG
genomic: AAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgcc ... atgcacgcagTGTGTTCAAGGAGTGCCCCCACCCCGACGAGAAGCAAAGGATGGAGCTCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGCCTCCGGTGACGAGATCGACCCGGACAACAGTAACCCTCGCAGGAAGAAGAAGCGATACCACCGCCACACACCGCAGCAAATCCAAGAACTCGAAGCgtatgtcgccgcgccgcctaacatctatcacaaaacccggccagaccatgcatggaagaaatctctcttttttcacgagtttttatatatagacctataataatagttataagcatatgcacgcag

- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC