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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctgctagctcatgcttattcctctcttcaatttcttatggatttgtgtttgtctgtacgtgattcctgggtcgcaaaaccaaatcaaattatctgtgcccag

Basic information

species Zea mays
transcript GRMZM2G116185_T07
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71441212|gb|DR822262.1|DR822262
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|101393159|gb|EB818510.1|EB818510
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|101385166|gb|EB814629.1|EB814629
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|76291869|gb|DV031437.1|DV031437
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|78086977|gb|DV515370.1|DV515370
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|76291868|gb|DV031436.1|DV031436
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|71316518|gb|DR794933.1|DR794933
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|78092357|gb|DV520731.1|DV520731
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGC-ACTTTCGCAGCCTCTGCCTGTG
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAAC-TTCGCAGCCTCTGCCTGTG
EST: gi|78092358|gb|DV520732.1|DV520732
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|93012864|gb|EB638384.1|EB638384
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|91055983|gb|EB166401.1|EB166401
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|71299044|gb|DR785510.1|DR785510
EST:     GATCTNCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|76934748|gb|DV174011.1|DV174011
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|50336434|gb|CO531560.1|CO531560
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGNCA-CTTCGCAGCCTCTGCCTGTG
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTG-CAACTTCGCAGCCTCTGCCTGTG
EST: gi|86472078|gb|DY238448.1|DY238448
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGTGTGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGAGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|71442162|gb|DR823212.1|DR823212
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|76012084|gb|DT939254.1|DT939254
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|78084497|gb|DV512890.1|DV512890
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|91049965|gb|EB160383.1|EB160383
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|74244543|gb|DT652457.1|DT652457
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|76011281|gb|DT938451.1|DT938451
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|149058752|gb|EE156770.2|EE156770
EST:     CAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: CAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|149109966|gb|EE293776.2|EE293776
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|76910706|gb|DV163993.1|DV163993
EST:     ATCTCCA-GGCGGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCNTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: ATCTCCAGGGC-GGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|148953903|gb|EC899284.2|EC899284
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|71323165|gb|DR798250.1|DR798250
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|71299046|gb|DR785511.1|DR785511
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|71316516|gb|DR794932.1|DR794932
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|50330625|gb|CO525751.1|CO525751
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|74244764|gb|DT652678.1|DT652678
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|74244765|gb|DT652679.1|DT652679
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|76014748|gb|DT941918.1|DT941918
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|101395608|gb|EB819733.1|EB819733
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCCTGCA-CTTCCCAGCCTCTGCCTGTG
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTC-TGCAACTTCGCAGCCTCTGCCTGTG
EST: gi|71442161|gb|DR823211.1|DR823211
EST:     ATCTCCAGGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTG                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: ATCTCCA-GGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
EST: gi|71323162|gb|DR798249.1|DR798249
EST:     GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTA                         GATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA
genomic: GATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctg ... ctgtgcccagGATCCTGGCATGGGAGGATGGATTCTGCAACTTCGCAGCCTCTGCCTGTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAACTGgtaccacctgctagctcatgcttattcctctcttcaatttcttatggatttgtgtttgtctgtacgtgattcctgggtcgcaaaaccaaatcaaattatctgtgcccag

- - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - GGAGGA