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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAAAGCTTGGAAAGGGAGGGTTTGGGCAAGTATATGTTGGTCGTCGCATTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAGgtctttatgccttctctggaatttttaattgtaattcatcgtagctgcattagcataaacgttttttttcatactag

Basic information

species Zea mays
transcript GRMZM2G116151_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G116151_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g11140.1 (Oryza sativa), 5'ss of exon 2
CAGAAAGCTTGGAAAGGGAGGGTTTGGGCAAGTATATGTTGGTCGTCGCATTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAGgtctttatgccttctctgga----------atttttaattgtaattcatcgtagctgcattagcataaacgttttttttcatactag
 |||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||| ||||||  |||||||| || || || |||||||| ||||||       ||  || |||          ||||  |  | |||   ||| ||| ||||||   ||  ||| |||| || |||| ||
TAGAAAGCTGGGAAAGGGAGGATTTGGGCAAGTATATGTTGGTCGGCGTATTTCCTCTCCTGGTGTTACCGACAGGACACCTGGAGCAAATGCTTTGGAGgtcagctcttctaatccggatgtctttttcatttccatatttaaaatatcatagttgcatttatattcacgcttttctttataccag

upper sequence: GRMZM2G116151_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv09s0002g03680.t01 (Vitis vinifera), 5'ss of exon 2
CAGAAAGCTTGGAAAGGGAGGGTTTGGGCAAGTATATGTTGGTCGTCGCATTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAGgt---------ctttatgccttctctggaatttttaattgtaattcatcgtagctgcattagcataaacgtttttt-ttcatactag
 || ||| | ||||||||||| ||||||||||| |||||||| |||||  | ||  ||   | |   |||||| | ||  | ||  |    ||| | |||||          |||||   ||   |    | || |  |||   |  || |   | |   | ||||    | |  | || ||  |||
AAGGAAGTTGGGAAAGGGAGGATTTGGGCAAGTGTATGTTGGCCGTCGTGTGTCTCCTATAAATCCAAGTGACCGAACTACTGGCCCTGGGGCTCTGGAGgtatattttggttttattttttgattattgtgttgatctgtttcttttctttttttctgaaacatatctatctcctattgattttag

upper sequence: GRMZM2G116151_T03 (Zea mays), 5'ss of exon 2
lower sequence: PP1S66_174V6.1 (Physcomitrella patens), 5'ss of exon 2
---------CAGAAAGCTTGGAAAGGGAGGGTTTGGGCAAGTATATGTTGGTCGTCGCATTTCCTCTCCTAGTGTTAGTGACAGGACGC-CCGGTGCGAATGCTTTAGAGgtctttatgccttctctggaatttttaattgtaatt-catcgtagctgcattagcataaacgttttttttcatactag----------------------------------------------------------
          || || |||||||||||||| ||||| ||||||||||||||||||||         ||  |||| | | | |||  ||| | ||| |  | ||| | |||||  |      | ||||      || |  |    |    |||||       |||     | | || |  | ||  |||                                                          
CAAGATTGAGAGGAAACTTGGAAAGGGAGGCTTTGGTCAAGTATATGTTGGTCGTCG---------TCTCAGTGGTGG-GGCAGAGCGCACTGGTCCACAGGCTGTCGAGgtactc---tttactctaattcgttgaggtccggtcgtgtcgtattccgtatagtgccgagggttgtgattat-ttagcgagtatctttgctttgtgtctggaagtacaaactgagtcttgttttcgtgctcgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30306558|gb|CD001231.1|CD001231
EST:     TTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAG                         GTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCT
genomic: TTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAGgtctttatgc ... ttcatactagGTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCT
EST: gi|101387539|gb|EB815784.1|EB815784
EST:     TTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAG                         GTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCT
genomic: TTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAGgtctttatgc ... ttcatactagGTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCT
EST: gi|211200248|gb|FK978072.1|FK978072
EST:     TTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGTGAATGCTTTAGAG                         GTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCT
genomic: TTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAGgtctttatgc ... ttcatactagGTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCT
EST: gi|71767696|gb|DR965633.1|DR965633
EST:     TTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAG                         GTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCT
genomic: TTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAGgtctttatgc ... ttcatactagGTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCT
EST: gi|78112677|gb|DV531071.1|DV531071
EST:     TTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAG                         GTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCT
genomic: TTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAGgtctttatgc ... ttcatactagGTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCT
EST: gi|211200247|gb|FK978071.1|FK978071
EST:     TTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAG                         GTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCT
genomic: TTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAGgtctttatgc ... ttcatactagGTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCT
EST: gi|149078987|gb|EE167841.2|EE167841
EST:     TTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAG                         GTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCT
genomic: TTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAGgtctttatgc ... ttcatactagGTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCT
EST: gi|30031898|gb|CB833749.1|CB833749
EST:     TTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAG                         GTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCT
genomic: TTTCCTCTCCTAGTGTTAGTGACAGGACGCCCGGTGCGAATGCTTTAGAGgtctttatgc ... ttcatactagGTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCT