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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCCCGGGGGCCGCAGGGTACGAGCCGCGTTGCCTTCGGACCAGCGCCCAGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgctccttctcctggttagaaattgtttggtttaataaacgactatggcccttgattgttggttccgtgtaagggatgcggggttggtcctag...

Basic information

species Zea mays
transcript GRMZM2G116087_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148966792|gb|EE017885.2|EE017885
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|149029771|gb|EE286265.2|EE286265
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|148973538|gb|EE024639.2|EE024639
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211279057|gb|FK954642.1|FK954642
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|148938252|gb|EC882544.2|EC882544
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|149088482|gb|EE177591.2|EE177591
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|28873742|gb|CB329688.1|CB329688
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|78089260|gb|DV517634.1|DV517634
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|94479717|gb|EB708675.1|EB708675
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211029807|gb|FL058985.1|FL058985
EST:     AKGAACAAGGGGCTCCGCACGGCRAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|211466167|gb|FL380586.1|FL380586
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|78111571|gb|DV529968.1|DV529968
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|148952137|gb|EC897931.2|EC897931
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|71448582|gb|DR829632.1|DR829632
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|149086680|gb|EE176220.2|EE176220
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
EST: gi|148961522|gb|EE012274.2|EE012274
EST:     AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAA                         GGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA
genomic: AGGAACAAGGGGCTCCGCACGGCCAACAACTCCGCAACGCCCATGGCTAAgtacgaacgc ... cttttattagGGAAGAGAGGGTTGATCGAAGTGAAATATTGACATTGGATAGCATCAGACA