1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCACGGCCAAGAAATCCGGGGACGTGTCGGAGCTCCAGATCGGCGTCAAGgtatcctactaggactgttttcccccactcatgtgcgatatgttatgtttcattccctatgttatgtttcattccctccattcattgttggattggactg...
species | Zea mays |
transcript | GRMZM2G115757_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCACGGCCAAGAAATCCGGGGACGTGTCGGAGCTCCAGATCGGCGTCAAG TACAAGCCGGAATCATGCAGCATTCAAGCTCACAAAEST: gi|211211874|gb|FL151949.1|FL151949
genomic: CCACGGCCAAGAAATCCGGGGACGTGTCGGAGCTCCAGATCGGCGTCAAGgtatcctact ... taaaatgcagTACAAGCCGGAATCATGCAGCATTCAAGCTCACAAA
EST: CCACGGCCAAGAAATCCGGGGACGTGTCGGAGCTCCAGATCGGCGTCAAG TACAAGCCGGAATCATGCAGCATTCAAGCTCACAAAGGTGACAAGEST: gi|14701389|gb|BI233807.1|BI233807
genomic: CCACGGCCAAGAAATCCGGGGACGTGTCGGAGCTCCAGATCGGCGTCAAGgtatcctact ... taaaatgcagTACAAGCCGGAATCATGCAGCATTCAAGCTCACAAAGGTGACAAG
EST: CACGGCCAAGAAATCCGGGGACGCTGTCGGAGCTCCAGATCGGCGTCAAG TACAAGCCGGAATCATGCAGCATTCAA
genomic: CACGGCCAAGAAATCCGGGGACG-TGTCGGAGCTCCAGATCGGCGTCAAGgtatcctact ... taaaatgcagTACAAGCCGGAATCATGCAGCATTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACGGCCAAGAAATCCGGGGACGTGTCGGAGCTCCAGATCGGCGTCAAGgtatcctactaggactgttttcccccactcatgtgcgatatgttatgtttcattccctatgttatgtttcattccctccattcattgttggattggactg
- - - - AAGAAA
- - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctcc