Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttccactcgactctccggtatttgtttttgtgatgtcgccttgttactcttggccttgatttgacatgatgcataggtaggctttttttagtgg...

Basic information

species Zea mays
transcript GRMZM2G115049_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115049_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g45950.1 (Oryza sativa), 5'ss of exon 2
ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttccactcgactctccggt-atttgtttttgtgatgtcgccttg--ttactcttggccttgatttgacatgatgcataggtaggctttttttagtgg
||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |  | |    | ||  | |||| |||  ||| |||     ||   |  |||||  ||    ||    |  |   | | | || ||  |||     
ATCTCCTGTATAGGGATTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCGAACGGAGCTgtgagttcctccccacgacgcctttcatttttttgggtggtgttcttgtgaagttatcttgttctgttcttttactagtatctggtttggtttggttttt---

upper sequence: GRMZM2G115049_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA18G49070.1 (Glycine max), 5'ss of exon 2
ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagt---ttccactcgactctccggtatttgtttttgtgatgtcgccttgttactcttggccttgatttgacat--gatgcataggtaggctttttttagtgg
 ||| || |  |||||||||||||  ||||||||||||||  ||||||||||| |  | |  |||| |||||||   ||  | |  |  || |  | |||||       |   |      |       |   ||| ||||  ||  ||||      |  |||| | | |    
-TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCGACTGGAGTTGtgagtgttttttatttaatccttcaatttttgtggc-acaaacacaatgcatggaatgggtatttgttttgttattggatgttctatttagcttgtgtgaa---

upper sequence: GRMZM2G115049_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA09G37570.1 (Glycine max), 5'ss of exon 2
ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttccactcgactctccggtattt--gtttttgtgatgtcgccttgttactcttggccttgatttgacatgatgcataggtaggctttttttagtgg--
|||| || |  |||||||||||||  ||||||||||||||  ||||||||||| |  |||  |||| ||||||| |    |    | |    | |||   ||||||||       |    | |           |||||   || ||  | |||  | | ||    ||    
ATCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTACTCACCCACTGGAGTTgtgagtgtttttt---ttttttaatctttcaatttttgtggcacaaacacaatgcatggaatgggtatttgttttgctgt-tgggtttgttattggatgttctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348128|gb|DN215101.1|DN215101
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|211069746|gb|FL326276.1|FL326276
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGSCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|211067138|gb|FL332478.1|FL332478
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAA-CACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|211118967|gb|FL349445.1|FL349445
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|211282848|gb|FL309040.1|FL309040
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|60349522|gb|DN216495.1|DN216495
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|149083876|gb|EE173252.2|EE173252
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|101387379|gb|EB815705.1|EB815705
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|211455059|gb|FL323071.1|FL323071
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|71436182|gb|DR817232.1|DR817232
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|211463261|gb|FL358480.1|FL358480
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|211462556|gb|FL333206.1|FL333206
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|15545704|gb|BI643498.1|BI643498
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|149014219|gb|EE043774.2|EE043774
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|149081524|gb|EE170660.2|EE170660
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|149108403|gb|EE292740.2|EE292740
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|76282636|gb|DV022204.1|DV022204
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|211455392|gb|FL341711.1|FL341711
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAASSACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|211505801|gb|FL357190.1|FL357190
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|91056164|gb|EB166582.1|EB166582
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|211500080|gb|FL310132.1|FL310132
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAASSACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|29130483|gb|CB381187.1|CB381187
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|76917796|gb|DV167007.1|DV167007
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|71303230|gb|DR787717.1|DR787717
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|37424398|gb|CF649931.1|CF649931
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|101395788|gb|EB819821.1|EB819821
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|211095737|gb|FL312081.1|FL312081
EST:     ACCACACGGACMRGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|9794381|gb|BE552689.1|BE552689
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGTCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|71448665|gb|DR829715.1|DR829715
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|32909156|gb|CF013968.1|CF013968
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|74241152|gb|DT649066.1|DT649066
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|71430935|gb|DR811985.1|DR811985
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|148963152|gb|EE014121.2|EE014121
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|149080662|gb|EE169719.2|EE169719
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|32906855|gb|CF011668.1|CF011668
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|211342710|gb|FL349130.1|FL349130
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|211512108|gb|FL316104.1|FL316104
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|149013973|gb|EE043481.2|EE043481
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|211148579|gb|FL032470.1|FL032470
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|93012482|gb|EB638002.1|EB638002
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|76289467|gb|DV029035.1|DV029035
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|211399297|gb|FL337150.1|FL337150
EST:     ACMACACGGACCAGAAGWTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAA-CACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|213191071|gb|FM193242.1|FM193242
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|91873213|gb|EB403170.1|EB403170
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|50327068|gb|CO522194.1|CO522194
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|149107027|gb|EE188922.2|EE188922
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|148950071|gb|EC895603.2|EC895603
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|71757445|gb|DR955382.1|DR955382
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|50325873|gb|CO520999.1|CO520999
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|149112693|gb|EE295526.2|EE295526
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|78111026|gb|DV529423.1|DV529423
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|32907264|gb|CF012077.1|CF012077
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|78109070|gb|DV527487.1|DV527487
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|60341814|gb|DN208787.1|DN208787
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|32793635|gb|CD945871.1|CD945871
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTA
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTA
EST: gi|15590470|gb|BI675086.1|BI675086
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|211033926|gb|FL358169.1|FL358169
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAS-ACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|101390351|gb|EB817110.1|EB817110
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATC
EST: gi|211222771|gb|FL342810.1|FL342810
EST:     ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCT                         GCCATTACTGCTGCAAS-ACGAAGGAAAGATGAAGCTATCTTTAATGAAAT
genomic: ACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGA-GGAAAGATGAAGCTATCTTTAATGAAAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 263

ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATCCAGAGCCAGCTGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 186

ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATCCAGAGCCAGCTGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 194

ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATCCAGAGCCAGCTGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 737

ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttcc ... gctgtgttagGCCATTACTGCTGCAAGCACGAGGAAAGATGAAGCTATCTTTAATGAAATCCAGAGCCAGCTGAAGCACAACAATGTGACTGTGGATGTGAAAGCAACTT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCTCCTATATAAGGACTACCACACGGACCAGAAGTTCACGCTCACCACCTACGCCGCCAACGGAGCTgtgagtttccactcgactctccggtatttgtttttgtgatgtcgccttgttactcttggccttgatttgacatgatgcataggtaggctttttttagtgg

- - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT