ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

ACCAGGGAATGTACAACGCATTGACTTGGTGGGAGCAAATGGATAATGGCAAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctgcccatcgtatctctgttcaatttcattttcattctctatggctatgtttaggagaaatattatgtgatagatacactcaaaatgtttgct...

Basic information

species	Zea mays
transcript	GRMZM2G114911_T02
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G114911_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g45180.1 (Oryza sativa), 5'ss of exon 2

ACCAGGGAATGTACAACGCATTGACTTGGTGGGAGCAAATGGATAATGGCAAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctgcccatcgtatctctgttcaatttcattttcattctctatggctatgtttaggaga--aatattatgtgatagatacactcaaaatgtttgct-
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||  |||| ||||||||||||||||||||  |   | |  ||  |||   ||  | |||||  ||| |  |    |||     ||     |  |||  |    |   |||  ||| ||||   |  
ACCAGGGAATGTACAACACATTGACTTGGTGGGAGCAAATGGACAATGGCAAACAGCTTACTCGCAACAGGAAGTTCCTTGTTGTAGTTCCTGTTGTCCTgtaagtattcttc-tattacttcttagca--tccatttcaattatacaaacttattggcgggcacttaggatttaggagcaataacaggcaacatgtactcaa

upper sequence: GRMZM2G114911_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G01830.1 (Glycine max), 5'ss of exon 2

ACCAGGGAATGTACAACGCATTGACTTGGTGGGAGCAAATGGATAATGGCAAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctgcccatcgtatctctgttcaatttcattttcattc-tctatggctatgtttaggagaaatattatgtga---tagatacactcaaaatgtttgct
|||| || || |||||   ||||||||||||||||||  | || ||||| || |||||||||||||| |||||||| ||||  ||||||||| | || |||||||| ||  | |   |   |    |||  || || | ||    | | ||  | || | | |  | |   | | |||   |   | ||| |    | | |   
ACCAAGGGATCTACAATAGATTGACTTGGTGGGAGCAGGTAGACAATGGAAAGCAGCTTACTCGTAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCTgtaagttct--ctaatttgcttgccatcatgtttatatacaaaggtatctgcttctggtgatgtcatagggtctatgaatgtgtgtgcacccttgttatata--

upper sequence: GRMZM2G114911_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G02540.1 (Glycine max), 5'ss of exon 2

ACCAGGGAATGTACAACGCATTGACTTGGTGGGAGCAAATGGATAATGGCAAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctgcccatcgtatctctgttcaatttcattttcattctc-tatggctatgtttaggagaaatattatgtga---tagatacactcaaaatgtttgct
|||| || || |||||   ||||||||||||||||||  | || ||||| || ||||||||||| || |||||||| ||||  ||||||||| | || |||||||| ||  | |   ||  |    ||| ||| || | ||   |  | ||  | || | | |  | |   | | | |   |   | ||| |    | | |   
ACCAAGGGATCTACAATAGATTGACTTGGTGGGAGCAGGTAGACAATGGAAAGCAGCTTACTCGGAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCTgtaagttct--ctaatttacttgccatcatttttatatacaaagttatctgcttctggtgatgtcatagggtctataaatgtgtgtgcacccttgttatata--

upper sequence: GRMZM2G114911_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA07G05940.1 (Glycine max), 5'ss of exon 2

ACCAGGGAATGTACAACGCATTGACTTGGTGGGAGCAAATGGATAATGGCAAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctgcccatcgtatctctgttcaatttcattttcattc-tctatggctatgtttaggagaaatattatgtgatagatacactcaaaatgtttgct-
|||| || || |||||   ||||||||||||||||||  | || ||||| || |||||||||||||| |||||||| ||||  ||||||||| | || |||||||| ||     | | ||  |   ||| ||| || | ||    | | ||  | |  | | |  | | | | | ||| ||      |      ||   |  
ACCAAGGGATCTACAATAGATTGACTTGGTGGGAGCAGGTAGACAATGGAAAGCAGCTTACTCGTAACAGGAAGTTTCTCACAGTTGTTCCTTTGGTGCTgtaagttctctaatttgcatgcc--atcatttttatatacaaaggtatctgcttctagtgatgtcatagagtctatgaaagtgtgcgtgtgtgcgtgcaccc

upper sequence: GRMZM2G114911_T02 (Zea mays), 5'ss of exon 2
lower sequence: AT5G42000.1 (Arabidopsis thaliana), 5'ss of exon 2

ACCAGGGAATGTACAACGCATTGACTTGGTGGGAGCAAATGGATAATGGCAAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctgcccatcgtatctctgttcaatttcattttcattctctatggcta--tgtttaggagaaatattatgtgatagatacactcaaaatgtttgct
| || ||| | || ||   ||||||||||||||| || || ||||||||||| |||||||| |||||| | || || ||||  ||||||||||||||| ||||||| |   |  || ||||||  |   ||||  ||||   ||   ||  ||   || |   |   | |||      || ||    || |   | |||   
ATCAAGGAGTCTATAATAGATTGACTTGGTGGGAACAGATTGATAATGGCAAGCAGCTTACACGTAATCGCAAATTTCTCACCGTTGTTCCTGTTGTCTTgtaagttccttctctcatatctcattaggattttgttttgcatcatcatctcttgttgatcttgttcagtatcgaaaaattgaatgccttaccttatttt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|71445807|gb|DR826857.1|DR826857

EST:     AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT                         GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT

EST: gi|78082275|gb|DV510687.1|DV510687

EST:     AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT                         GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT

EST: gi|78081154|gb|DV509566.1|DV509566

EST:     AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT                         GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT

EST: gi|32929560|gb|CF034372.1|CF034372

EST:     AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT                         GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT

EST: gi|6681814|gb|AW287801.1|AW287801

EST:     AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT                         GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT

EST: gi|78082274|gb|DV510686.1|DV510686

EST:     AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT                         GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT

EST: gi|14245575|gb|BG874157.1|BG874157

EST:     AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT                         GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT

EST: gi|211453252|gb|FL452574.1|FL452574

EST:     AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT                         GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT

EST: gi|78081153|gb|DV509565.1|DV509565

EST:     AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT                         GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT

EST: gi|71445808|gb|DR826858.1|DR826858

EST:     AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT                         GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT

EST: gi|32929853|gb|CF034665.1|CF034665

EST:     AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGGTCCTGTTGTCCT                         GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT

EST: gi|18178373|gb|BM379583.1|BM379583

EST:     AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT                         GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT

EST: gi|211414185|gb|FL206614.1|FL206614

EST:     AACAGCTTACTCGTAATAGGAAGTTCCTCATTGGGTGT-CCTGTTGTCCT                         GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
genomic: AACAGCTTACTCGTAATAGGAAGTTCCTCATTGT-TGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT

EST: gi|60397481|gb|DN230297.1|DN230297

EST:     AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCT                         GTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT
genomic: AAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 81

ACCAGGGAATGTACAACGCATTGACTTGGTGGGAGCAAATGGATAATGGCAAACAGCTTACTCGTAATAGGAAGTTCCTCATTGTTGTTCCTGTTGTCCTgtaagtgctg ... ttcttgacagGTATCTGATAGCTCTGCACACCACAGACTACCAACAACCTATGCTCTTCCTCAATACCCTTGCCGTCAGTGTGCTTGTGGTCGCGAAACTACCGAATATG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 96

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 111