1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTTACTTGACGATTTTGACTTTGAGCAGAATGAAGCTACACCCATTAAGGATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacattttattatttctcaagttaatgttatatgatttacagtttttacctattttaaagtctgtattcactgttttctgaacaatgactacttaacca...
species | Zea mays |
transcript | GRMZM2G114172_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAEST: gi|76021044|gb|DT948214.1|DT948214
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGA
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGACEST: gi|71428299|gb|DR809349.1|DR809349
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGACEST: gi|78113538|gb|DV531929.1|DV531929
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGACEST: gi|6022603|gb|AW067415.1|AW067415
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGNGCCGCAAAGGAAAGAAGCTGCTTGGCCTTGACEST: gi|148958197|gb|EC904402.2|EC904402
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGACEST: gi|101394403|gb|EB819136.1|EB819136
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAAEST: gi|31405818|gb|CD484550.1|CD484550
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAA
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGACEST: gi|78109953|gb|DV528368.1|DV528368
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACTTGACGATTTTGACTTTGAGCAGAATGAAGCTACACCCATTAAGGATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacattttattatttctcaagttaatgttatatgatttacagtttttacctattttaaagtctgtattcactgttttctgaacaatgactacttaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA