1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTACTTGACGATTTTGACTTTGAGCAGAATGAAGCTACACCCATTAAGGATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacattttattatttctcaagttaatgttatatgatttacagtttttacctattttaaagtctgtattcactgttttctgaacaatgactacttaacca...
species | Zea mays |
transcript | GRMZM2G114172_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGACEST: gi|116813073|gb|EC855467.1|EC855467
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAEST: gi|78090560|gb|DV518934.1|DV518934
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGA
EST: AAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGACEST: gi|78106134|gb|DV524552.1|DV524552
genomic: AAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGACEST: gi|71428299|gb|DR809349.1|DR809349
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGACEST: gi|6022603|gb|AW067415.1|AW067415
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGNGCCGCAAAGGAAAGAAGCTGCTTGGCCTTGACEST: gi|78090561|gb|DV518935.1|DV518935
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGACEST: gi|148958197|gb|EC904402.2|EC904402
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGACEST: gi|101394403|gb|EB819136.1|EB819136
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAAEST: gi|31405818|gb|CD484550.1|CD484550
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAA
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGACEST: gi|76021044|gb|DT948214.1|DT948214
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGACEST: gi|149088593|gb|EE177708.2|EE177708
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGACEST: gi|32845859|gb|CD985540.1|CD985540
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGACEST: gi|71772417|gb|DR970350.1|DR970350
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
EST: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAG ATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
genomic: ATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacatttta ... gttcttatagATCAAGCTCTTGAATCCGTGCCGCAAAGGAAAGAAGCTGCTTGTCCTTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACTTGACGATTTTGACTTTGAGCAGAATGAAGCTACACCCATTAAGGATAAAGATGTCTACAAGCAAAAATTAAAGCGACGCGCAAGTCGTTATAAGgtacattttattatttctcaagttaatgttatatgatttacagtttttacctattttaaagtctgtattcactgttttctgaacaatgactacttaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA