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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACGTGATGCCGACTACAAGGGACAAGTACAGGCAGTCACGGCTGCAGGGGTACGCCAACTTTGAGAACGTGCCTAATTCCGGAAGGCTTTCTGAGAAGgcatgccatagctacgcgtttcagattagttatactacctggtcgagttgagcatctatttaggccgagtaaacatctcatgtggcgatgctggtgcag

Basic information

species Zea mays
transcript GRMZM2G113726_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47961405|gb|CN844114.1|CN844114
EST:     GGTACGCCAACTTTGAGAACGTGCCTAATTCCGGAAGGCTTTCTGAGAAG                         GAATGCATGCCTGCAGAGAAAGGCCAACTCTACTACGAGTTTCAGCACAGC
genomic: GGTACGCCAACTTTGAGAACGTGCCTAATTCCGGAAGGCTTTCTGAGAAGgcatgccata ... gctggtgcagGAATGCATGCCTGCAGAGAAAGGCCAACTCTACTACGAGTTTCAGCACAGC
EST: gi|32795211|gb|CD947447.1|CD947447
EST:     GGTACGCCAACTTTGAGAACGTGCCTAATTCCGGAAGGCTTTCTGAGAAG                         GAATGCATGCCTGCAGAGAAAGACCAACTCTACTACGAGTTTCAGCACAGC
genomic: GGTACGCCAACTTTGAGAACGTGCCTAATTCCGGAAGGCTTTCTGAGAAGgcatgccata ... gctggtgcagGAATGCATGCCTGCAGAGAAAGGCCAACTCTACTACGAGTTTCAGCACAGC
EST: gi|60349121|gb|DN216094.1|DN216094
EST:     GGTACGCCAACTTTGAGAACGTGCCTAATTCCGGAAGGCTTTCTGAGAAG                         GAATGCATGCCTGCAGAGAAAGGCCAACTCTACTACGAGTTTCAGCACAGC
genomic: GGTACGCCAACTTTGAGAACGTGCCTAATTCCGGAAGGCTTTCTGAGAAGgcatgccata ... gctggtgcagGAATGCATGCCTGCAGAGAAAGGCCAACTCTACTACGAGTTTCAGCACAGC