1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GACGATGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttctctctctctcgtataccggtgttttccatcgaccagggggcttgtggtgggcgggcaggatttgggctccaggaggggggtaattgttaactgcgtttcctttgccgtgcttcgtttcag
species | Zea mays |
transcript | GRMZM2G112865_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|211058276|gb|FK981928.1|FK981928
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCRGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|110963515|gb|EE183415.1|EE183415
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|211055303|gb|FK981914.1|FK981914
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTTCAGCTAGGGAAGGAGEST: gi|211055307|gb|FK981918.1|FK981918
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|211058285|gb|FK981937.1|FK981937
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|22521341|gb|BU080152.1|BU080152
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTCGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|211058284|gb|FK981936.1|FK981936
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|32909297|gb|CF014109.1|CF014109
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTCGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|37393499|gb|CF634015.1|CF634015
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|60356193|gb|DN223166.1|DN223166
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|211055308|gb|FK981919.1|FK981919
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|32909298|gb|CF014110.1|CF014110
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTCGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|211055312|gb|FK981923.1|FK981923
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|211058281|gb|FK981933.1|FK981933
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTNGCAGCTAGGGAAGGAEST: gi|211055306|gb|FK981917.1|FK981917
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGT-GCAGCTAGGGAAGGA
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|211055310|gb|FK981921.1|FK981921
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|78022550|gb|DV490937.1|DV490937
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|211055309|gb|FK981920.1|FK981920
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|4730329|gb|AI649495.1|AI649495
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|211058275|gb|FK981927.1|FK981927
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|211058282|gb|FK981934.1|FK981934
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|211061247|gb|FK981940.1|FK981940
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|148963908|gb|EE015020.2|EE015020
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|211058274|gb|FK981926.1|FK981926
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTNGGGAAGGAGEST: gi|113702176|gb|EE679680.1|EE679680
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|149097536|gb|EE183416.2|EE183416
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|148963909|gb|EE015021.2|EE015021
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|50337603|gb|CO532729.1|CO532729
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|211058278|gb|FK981930.1|FK981930
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGRSGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAGEST: gi|211055304|gb|FK981915.1|FK981915
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
EST: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAG GCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
genomic: TGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttc ... ttcgtttcagGCGAAGGAGGTTCGGCGGAAGGCGGATCAGATGGTGCAGCTAGGGAAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGATGGTGTCGCAGCTGGTGAAGCACGAGCGCATCGAGACCACCGTTGCCAAGgtattttttctctctctctcgtataccggtgttttccatcgaccagggggcttgtggtgggcgggcaggatttgggctccaggaggggggtaattgttaactgcgtttcctttgccgtgcttcgtttcag
- - - - - - GCAGCT
- - - - - - CAGCTG
- - - - - - - - - - TGAAGC