1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATCATTTCGCCGTATCACCTGTACCTTAACCCGAAGCTCGTGGTGCAGCACTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGGgtatgcgctccgtgccctctatcatataatagcctcaactgcgacccgctttgacgtgccaactatatgttgtgtggtgtggatagaggctcttgttgca...
species | Zea mays |
transcript | GRMZM2G112609_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGG ATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTCEST: gi|37422155|gb|CF648783.1|CF648783
genomic: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGGgtatgcgctc ... tttcccccagATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTC
EST: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGG ATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAEST: gi|91048268|gb|EB158686.1|EB158686
genomic: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGGgtatgcgctc ... tttcccccagATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCA
EST: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGG ATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTCEST: gi|211475584|gb|FL117463.1|FL117463
genomic: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGGgtatgcgctc ... tttcccccagATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTC
EST: CTACGAGATTTGGCGCCTCGTCACCAACTTCCTCTACTTCCGCAAGATGG ATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTCEST: gi|32919420|gb|CF024232.1|CF024232
genomic: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGGgtatgcgctc ... tttcccccagATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTC
EST: CTACGAGATTTGGCGCCTCGTCACCAACTTCCTCTACTTCCGCAAGATGG ATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGATACTGCAAGCTTCEST: gi|211475588|gb|FL117467.1|FL117467
genomic: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGGgtatgcgctc ... tttcccccagATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTC
EST: CTACGAGATTTGGCGCCTCGTCACCAACTTCCTCTACTTCCGCAAGATGG ATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTCEST: gi|50333879|gb|CO529005.1|CO529005
genomic: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGGgtatgcgctc ... tttcccccagATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTC
EST: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGG ATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTCEST: gi|6637090|gb|AW261362.1|AW261362
genomic: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGGgtatgcgctc ... tttcccccagATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTC
EST: CTACGAGATTTGGCGCCTCGTCACCAACTTCCTCTACTTCCGCAAGATGG ATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGATACTGCAAGCTTCEST: gi|211475590|gb|FL117469.1|FL117469
genomic: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGGgtatgcgctc ... tttcccccagATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTC
EST: CTACGAGATTTGGCGCCTCGTCACCAACTTCCTCTACTTCCGCAAGATGG ATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTCEST: gi|56382233|gb|CV984902.1|CV984902
genomic: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGGgtatgcgctc ... tttcccccagATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTC
EST: CTACGAGATTTGGCGCCTCGTCACCAACTTCCTCTACTTCCGCAAGATGG ATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGATACTGCAAGCTTCEST: gi|76012317|gb|DT939487.1|DT939487
genomic: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGGgtatgcgctc ... tttcccccagATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTC
EST: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGG ATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTCEST: gi|91878613|gb|EB408570.1|EB408570
genomic: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGGgtatgcgctc ... tttcccccagATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTC
EST: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGG ATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTCEST: gi|148970116|gb|EE021054.2|EE021054
genomic: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGGgtatgcgctc ... tttcccccagATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTC
EST: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGG ATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTCEST: gi|60342635|gb|DN209608.1|DN209608
genomic: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGGgtatgcgctc ... tttcccccagATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTC
EST: CTACAAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGG ATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTCEST: gi|211475586|gb|FL117465.1|FL117465
genomic: CTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGGgtatgcgctc ... tttcccccagATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTC
EST: TACGHBGATTTGGCGCCTCGTCACCAACTTCCTCTACTTCCGCAAGATGG ATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGATACTGCAAGCTTC
genomic: TACGA-GATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGGgtatgcgctc ... tttcccccagATTTGGATTTTCTATTCCACATGTTCTTTCTTGCACGGTACTGCAAGCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCATTTCGCCGTATCACCTGTACCTTAACCCGAAGCTCGTGGTGCAGCACTACGAGATTTGGCGCCTCGTCACTAACTTCCTCTACTTCCGCAAGATGGgtatgcgctccgtgccctctatcatataatagcctcaactgcgacccgctttgacgtgccaactatatgttgtgtggtgtggatagaggctcttgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG