Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTACCATGCCTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggttgatgccgtgatggcctgcttcagctcatctgttcctgtttaagtcctgcttgtctcaccaattggcaattag

Basic information

species Zea mays
transcript GRMZM2G111713_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211131767|gb|FL358660.1|FL358660
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211361987|gb|FL325579.1|FL325579
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211474664|gb|FL315663.1|FL315663
EST:     TCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTNATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: TCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGT-ATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211093125|gb|FL308869.1|FL308869
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACTAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCT
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211147018|gb|FL367795.1|FL367795
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211532039|gb|FL347052.1|FL347052
EST:     TCCGATTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: TCCG-TTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|71443106|gb|DR824156.1|DR824156
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211378112|gb|FL330003.1|FL330003
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGAT-GGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|50337823|gb|CO532949.1|CO532949
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211043460|gb|FL324042.1|FL324042
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|101389514|gb|EB816695.1|EB816695
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211203210|gb|FL341871.1|FL341871
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATMGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211526596|gb|FL367655.1|FL367655
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211333000|gb|FL319500.1|FL319500
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211264640|gb|FL311733.1|FL311733
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTDCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211337834|gb|FL344315.1|FL344315
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTAT-CGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211095786|gb|FL316217.1|FL316217
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|38687337|gb|CK144368.1|CK144368
EST:     CGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GGTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211208019|gb|FL322438.1|FL322438
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211140827|gb|FL324953.1|FL324953
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211442630|gb|FL341621.1|FL341621
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|89758224|gb|DY687488.1|DY687488
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|88758133|gb|DY542274.1|DY542274
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211061706|gb|FL341836.1|FL341836
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|148938688|gb|EC883024.2|EC883024
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|71420010|gb|DR804975.1|DR804975
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211482873|gb|FL313335.1|FL313335
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211412583|gb|FL353839.1|FL353839
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|148989211|gb|EE031705.2|EE031705
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211474786|gb|FL319644.1|FL319644
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|91048124|gb|EB158542.1|EB158542
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|211481012|gb|FL352018.1|FL352018
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATKGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
EST: gi|76923558|gb|DV169546.1|DV169546
EST:     CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAG                         GTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG
genomic: CTCCGTTTCCCGACCCTTCGCTCCGACCCACACAGGCGTATGCGTACGAGgtgattcggt ... tggcaattagGTTTTGCAAGCTTGACGTACAATGCCAGCAGCATGATTGGCCACAATCTCG