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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttaccaagtccctggaaaggaagagtgcaataacttgttttgctttctttactgtcttagttctgatgcacaaaatccatcgagttag

Basic information

species Zea mays
transcript GRMZM2G111138_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6021912|gb|AW066840.1|AW066840
EST:     CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG                         GGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
EST: gi|211098820|gb|FL225942.1|FL225942
EST:     CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG                         GGTGGCAAAAAGAAGAAGCCGTCAATGTCA-TAGTAG
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAG
EST: gi|9731238|gb|BE509990.1|BE509990
EST:     CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG                         GGTGGCAAAAAGAAGAAGCCGT
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGT
EST: gi|211098821|gb|FL225943.1|FL225943
EST:     CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG                         GGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
EST: gi|71426094|gb|DR807144.1|DR807144
EST:     CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG                         GGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
EST: gi|60399740|gb|DN232550.1|DN232550
EST:     CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG                         GGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
EST: gi|78024478|gb|DV492865.1|DV492865
EST:     CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG                         GGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
EST: gi|211098823|gb|FL225945.1|FL225945
EST:     CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG                         GGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
EST: gi|211098819|gb|FL225941.1|FL225941
EST:     CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG                         GGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
EST: gi|211101290|gb|FL225947.1|FL225947
EST:     CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAG                         GGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT
genomic: CGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttac ... atcgagttagGGTGGCAAAAAGAAGAAGCCGTCAATGTCAGTAGTAGAGCCAAGTTCGGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAATCGGAGCAGAAGTCTCGAAAAGAGAGGCGGAAAGAGGCGAGATCAGAGAAGCACAAGCTGCGATTTCTTTCTTGGGTTGGGCATCAGgtgagtttaccaagtccctggaaaggaagagtgcaataacttgttttgctttctttactgtcttagttctgatgcacaaaatccatcgagttag

- - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC