1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGATGAGGGATTTCAAGCGGTTGATGCAGGACCCTCCGGCCGGCATAAGTGGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGgtatgatgcagaatccccccgcccccttttccccacttcttagtttgaattgtaatatttgacatcgtctttggatatgcttatttcttttacag
species | Zea mays |
transcript | GRMZM2G110983_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGG ACCTGATGATACCCCGTGGGATGGAGEST: gi|32797239|gb|CD949475.1|CD949475
genomic: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGgtatgatgca ... tcttttacagACCTGATGATACCCCGTGGGATGGAG
EST: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGG ACCTGATGATACCCCGTGGGATGGAGEST: gi|32799894|gb|CD952130.1|CD952130
genomic: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGgtatgatgca ... tcttttacagACCTGATGATACCCCGTGGGATGGAG
EST: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGG ACCTGATGATACCCCGTGGGATGGAGEST: gi|32807019|gb|CD959253.1|CD959253
genomic: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGgtatgatgca ... tcttttacagACCTGATGATACCCCGTGGGATGGAG
EST: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGG ACCTGATGATACCCCGTGGGATGGAGEST: gi|211443180|gb|FL376062.1|FL376062
genomic: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGgtatgatgca ... tcttttacagACCTGATGATACCCCGTGGGATGGAG
EST: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGG ACCTGATGATACCCCGTGGGATGGAGEST: gi|32799116|gb|CD951352.1|CD951352
genomic: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGgtatgatgca ... tcttttacagACCTGATGATACCCCGTGGGATGGAG
EST: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGG ACCTGATGATACCCCGTGGGATGGAGEST: gi|32798985|gb|CD951221.1|CD951221
genomic: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGgtatgatgca ... tcttttacagACCTGATGATACCCCGTGGGATGGAG
EST: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGG ACCTGATGGTACCCCGTGGGATGGAGEST: gi|32799638|gb|CD951874.1|CD951874
genomic: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGgtatgatgca ... tcttttacagACCTGATGATACCCCGTGGGATGGAG
EST: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGG ACCTGATGATACCCCGTGGGATGGAGEST: gi|211312738|gb|FL018802.1|FL018802
genomic: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGgtatgatgca ... tcttttacagACCTGATGATACCCCGTGGGATGGAG
EST: GGCGCCCCGCANGATAACAACATAATGCTGTGGAATGCTGTCATATTTGG ACCTGATGATACCCCGTGGGATGGAGEST: gi|32802786|gb|CD955022.1|CD955022
genomic: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGgtatgatgca ... tcttttacagACCTGATGATACCCCGTGGGATGGAG
EST: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGG ACCTGATGATACCCCGTGGGATGGAGEST: gi|32809657|gb|CD961891.1|CD961891
genomic: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGgtatgatgca ... tcttttacagACCTGATGATACCCCGTGGGATGGAG
EST: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTATCATATTTGG ACCTGATGATACCCCGTGGGATGGAG
genomic: GGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGgtatgatgca ... tcttttacagACCTGATGATACCCCGTGGGATGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGAGGGATTTCAAGCGGTTGATGCAGGACCCTCCGGCCGGCATAAGTGGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGgtatgatgcagaatccccccgcccccttttccccacttcttagtttgaattgtaatatttgacatcgtctttggatatgcttatttcttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG