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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTTGAGGGCAACACCGGAATTATTGTTATTGCTGCCACTAACCGAGCTGACATCTTGGATTCCGCTTTACTTAGACCTGGGCGCTTTGACAGACAGgttggttttatttgttggattctatctgtcattgcatttagattatttgtttaatcttagtaaagttgtcttgtctattgcttgtttgcaaaaattaagt...

Basic information

species Zea mays
transcript GRMZM2G110408_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110408_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g45820.1 (Oryza sativa), 5'ss of exon 2
TGGTTTTGAGGGCAACACCGGAATTATTGTTATTGCTGCCACTAACCGAGCTGACATCTTGGATTCCGCTTTACTTAGACCTGGGCGCTTTGACAGACAGgttggtttt-atttgttggattctatctgtcat-tgcatttagattatttgtttaatcttagtaaagttgtcttgtctattgcttgtttgcaaaaattaagt
|||||||||||| ||||| ||||| ||||||||||||||||| ||| | ||||| ||| ||||||| |||||||| |||||||| || ||||||||||||||| ||||| ||    || |   | | |   || || |  |   || | |  |   | |||    | |    ||||       ||   |  |||  ||    
TGGTTTTGAGGGGAACACTGGAATCATTGTTATTGCTGCCACCAACAGGGCTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAGgttagtttttatccactgaacattcttttggatgtgaacatctgttgtattctagtttttaactcattcaa-ttgtgacacaattaagtaaaaatgtttca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211130729|gb|FL008630.1|FL008630
EST:     CTGACATCTTGGATTCCGCTTTACTTACACCTGGGCGCTTTGACAGACAG                         GTGTCTGTTGATGTTCCTGATGTACGTGGAAGGACAGAGATTCTAAAAGTG
genomic: CTGACATCTTGGATTCCGCTTTACTTAGACCTGGGCGCTTTGACAGACAGgttggtttta ... cgttgcacagGTGTCTGTTGATGTTCCTGATGTACGTGGAAGGACAGAGATTCTAAAAGTG
EST: gi|37396149|gb|CF635362.1|CF635362
EST:     CTGACATCTGGGATTCCGC-TTACTTAGACCTGGGCGC-TTGACAGACAG                         GTGTCTGTTGATGTTCCTGATGTACGTGGAAGGACAGAGATTCTAAAAGTG
genomic: CTGACATCTTGGATTCCGCTTTACTTAGACCTGGGCGCTTTGACAGACAGgttggtttta ... cgttgcacagGTGTCTGTTGATGTTCCTGATGTACGTGGAAGGACAGAGATTCTAAAAGTG
EST: gi|67033229|gb|CO461978.1|CO461978
EST:     CTGACATCTTGGATTCCGCTTTACTTAGACCTGGGCGCTTTGACAGACAG                         GTGTCTGTTGATGTTCCTGATGTACGTGGAAGGACAGAGATTCTAAAAGTG
genomic: CTGACATCTTGGATTCCGCTTTACTTAGACCTGGGCGCTTTGACAGACAGgttggtttta ... cgttgcacagGTGTCTGTTGATGTTCCTGATGTACGTGGAAGGACAGAGATTCTAAAAGTG